CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77869
CDX82267
CDX83022
CDX86900
CDY03047
CDY09359
CDY17794
CDY21793
CDY24571
CDY25368
CDY33440
CDY36066
CDY41685
CDY42223
CDY45206
CDY53423

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	CDY03047	AT2G02560.1	21798944
AT2G19080.1	CDY09359	AT2G02560.1	21798944
AT2G19080.1	CDY41685	AT2G02560.1	21798944
AT2G19080.1	CDY45206	AT2G02560.1	21798944
AT2G19080.1	CDX82267	AT3G20000.1	17981999
AT2G19080.1	CDY24571	AT3G20000.1	17981999
AT2G19080.1	CDY25368	AT3G20000.1	17981999
AT2G19080.1	CDY33440	AT3G20000.1	17981999
AT2G19080.1	CDY36066	AT3G20000.1	17981999
AT2G19080.1	CDY42223	AT3G20000.1	17981999
AT2G19080.1	CDX77869	AT3G47640.1	21798944
AT2G19080.1	CDX83022	AT3G47640.1	21798944
AT2G19080.1	CDX86900	AT3G47640.1	21798944
AT2G19080.1	CDY17794	AT3G47640.1	21798944
AT2G19080.1	CDY21793	AT3G47640.1	21798944
AT2G19080.1	CDY53423	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39135	Canola	cytosol	95.86	95.56
CDY03366	Canola	cytosol, golgi, peroxisome	87.26	87.26
CDY66507	Canola	cytosol	86.62	86.62
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	83.44	83.17
VIT_11s0103g00300.t01	Wine grape	cytosol	58.6	56.44
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	57.64	55.52
PGSC0003DMT400021961	Potato	cytosol	57.64	55.52
KRH19062	Soybean	cytosol, nucleus, plasma membrane	52.55	51.56
KRH02821	Soybean	mitochondrion	52.23	51.09
KRH12285	Soybean	cytosol	52.23	50.0
KRH37302	Soybean	cytosol	52.23	49.85
OQU75905	Sorghum	cytosol, plastid	49.68	46.29
TraesCS7B01G030900.1	Wheat	plastid	49.04	45.7
TraesCS7A01G130600.1	Wheat	plastid	48.73	45.4
GSMUA_Achr1P15670_001	Banana	cytosol	42.99	44.85
TraesCS7D01G130000.1	Wheat	plastid	48.09	43.52
Os06t0168000-01	Rice	cytosol, peroxisome	47.77	43.35
Zm00001d045193_P002	Maize	mitochondrion	49.36	42.01
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	42.04	41.64

Protein Annotations

MapMan:23.2.2.2	GO:A0A078D308	EnsemblPlants:CDX82614	ProteinID:CDX82614	ProteinID:CDX82614.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00137816001
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Metaxin	InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150
PANTHER:PTHR12289	PANTHER:PTHR12289:SF41	SUPFAM:SSF47616	TMHMM:TMhelix	InterPro:Thioredoxin-like_fold	UniParc:UPI0004EACE15
SEG:seg	:	:	:	:	:

Description

BnaC07g02520D

Coordinates

chrLK031829:+:498070..500041

Molecular Weight (calculated)

35680.4 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.326

Length

314 amino acids

Sequence
(BLAST)

001: MEGDQDTSGF TLVTRKPCFG LPTACPNCLP AYIYLKLAQL PFQLAFNSTF PDSDELPYFE TGTYVAYNND DGGVIEKLKK DGVVNLDSQL QSLPDYLSLK
101: ALILSWLEEA LAYETWVGTE GVSAWKIYYS DLPWVISKVL FYKQTYMAKT RLGIIKENSE EREKQIYKRA SDAYEALSTR LGEQKFLFED RPSSLDAFFL
201: SHILFTIQVL PETSVLRTKL LEHGNLVRYA EKLKLEFLEA PSSSSSPPLH SFPSSFSRKG SKPKSKSKTE KTEEEKKFKK RAKFFLAAQF LAVVIYLSVM
301: GGVSNDELEY EDDD

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.