Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53423 | Canola | nucleus | 85.77 | 86.13 |
| CDY21793 | Canola | nucleus | 79.08 | 81.12 |
| CDX77869 | Canola | nucleus | 78.24 | 80.26 |
| AT3G47640.1 | Thale cress | nucleus | 70.29 | 70.0 |
| CDY17794 | Canola | cytosol | 22.18 | 67.09 |
| CDX86900 | Canola | cytosol | 17.15 | 61.19 |
| KRH56921 | Soybean | nucleus | 41.0 | 44.14 |
| KRH03461 | Soybean | nucleus | 40.59 | 43.11 |
| Bra033788.1-P | Field mustard | nucleus | 66.11 | 35.99 |
| Solyc03g116340.2.1 | Tomato | nucleus | 35.15 | 34.85 |
| PGSC0003DMT400001617 | Potato | nucleus | 34.73 | 34.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.54 | 34.43 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 35.15 | 32.81 |
| Os03t0379300-01 | Rice | nucleus | 31.8 | 30.16 |
| Zm00001d022225_P001 | Maize | nucleus | 29.29 | 26.32 |
| Zm00001d029339_P001 | Maize | nucleus | 29.29 | 25.93 |
| KXG28874 | Sorghum | nucleus | 29.71 | 25.63 |
| EER99751 | Sorghum | nucleus | 28.45 | 25.56 |
| Os11t0601700-01 | Rice | nucleus | 29.71 | 25.54 |
| Os07t0628500-01 | Rice | nucleus | 28.03 | 25.28 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 28.45 | 25.19 |
| Zm00001d048901_P002 | Maize | nucleus | 28.87 | 25.18 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 26.78 | 24.71 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 26.78 | 24.62 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 28.03 | 24.54 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 25.94 | 24.41 |
| KXG39270 | Sorghum | nucleus | 27.2 | 23.99 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 30.54 | 22.81 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 25.52 | 22.51 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 20.5 | 21.4 |
| Os08t0494375-00 | Rice | nucleus | 15.06 | 20.93 |
| TraesCS2D01G079100.1 | Wheat | plastid | 28.45 | 20.67 |
| TraesCS2A01G081300.1 | Wheat | plastid | 28.03 | 19.82 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 17.15 | 17.98 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 26.78 | 16.29 |
Protein Annotations
| EnsemblPlants:CDX83022 | EnsemblPlantsGene:GSBRNA2T00138485001 | Gene3D:4.10.280.10 | GO:A0A078D1R0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFscan:PS50888 | ProteinID:CDX83022 | ProteinID:CDX83022.1 |
| SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EF3872 | MapMan:15.5.32 | MapMan:25.4.1.4 | : |
Description
BnaA01g20220D
Coordinates
chrLK031831:+:590675..592425
Molecular Weight (calculated)
26701.3 Da
IEP (calculated)
6.403
GRAVY (calculated)
-0.732
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKTPSTSD DDPHASVDQR SRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLEMIQQN SGKASILCEA TKFLKDVFGQ IESLRKEQTA LLSESNYLTT
101: EKNELKEETS VLETEISRLH SEIEARVNQS KPDLNTSPTP EYHHQQYPQL ASQFSGLPIF QGAGFQQSSA TPPGATVILL PMHPDLQTQD TSDLTGHLQT
201: QAPTVMYNSS NVSKPCPRYA NAADSWPSRL LGERLRVSE
101: EKNELKEETS VLETEISRLH SEIEARVNQS KPDLNTSPTP EYHHQQYPQL ASQFSGLPIF QGAGFQQSSA TPPGATVILL PMHPDLQTQD TSDLTGHLQT
201: QAPTVMYNSS NVSKPCPRYA NAADSWPSRL LGERLRVSE
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.