Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024392.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY14574 | Canola | nucleus | 97.83 | 94.74 |
| AT5G65495.1 | Thale cress | nucleus | 81.52 | 79.79 |
| VIT_00s1522g00010.t01 | Wine grape | cytosol, nucleus, plastid | 57.61 | 54.64 |
| PGSC0003DMT400041764 | Potato | cytosol | 54.35 | 51.55 |
| Solyc11g010680.2.1 | Tomato | cytosol | 54.35 | 40.65 |
Protein Annotations
| EnsemblPlants:CDY67216 | EnsemblPlantsGene:GSBRNA2T00060450001 | ncoils:Coil | ProteinID:CDY67216 | ProteinID:CDY67216.1 | SEG:seg |
| UniParc:UPI000253F568 | UniProt:A0A078JN90 | MapMan:35.2 | : | : | : |
Description
BnaAnng23870DBnaAnng23870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN90]
Coordinates
chrLK035877:-:10048..10432
Molecular Weight (calculated)
11122.2 Da
IEP (calculated)
9.361
GRAVY (calculated)
-1.063
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MCYGHNQSFS RNTLRSRSHD GENEDSLVVD DLRDRLAETE ARLRRARARE AELSRRLEQM KRFVSVMEIM EAFLERRFQE QKDRIDRLFS TK
1: MCYGHNQSLS SRSSLRRRSH DGEDDSVVDD LRDRLAETEA RLRRARAREA ELSRRLEHMK RFVSVMEIIE TFLERRFQEQ KDRIARLFSP VSTK
Arabidopsis Description
SKIP34Protein SKIP34 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWU7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.