Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63159 | Canola | cytosol | 97.52 | 97.52 |
| CDY67544 | Canola | cytosol | 96.27 | 96.27 |
| Bra012216.1-P | Field mustard | cytosol | 92.55 | 93.12 |
| CDY29370 | Canola | cytosol | 70.81 | 70.81 |
| CDY44209 | Canola | cytosol | 70.19 | 70.19 |
| AT2G25700.1 | Thale cress | cytosol | 69.57 | 68.71 |
| AT1G20140.1 | Thale cress | cytosol | 69.57 | 68.71 |
| CDY43408 | Canola | cytosol | 63.35 | 67.11 |
| CDY68971 | Canola | cytosol | 61.49 | 65.13 |
| CDX68112 | Canola | cytosol | 59.01 | 62.91 |
| CDX85931 | Canola | cytosol | 59.01 | 62.91 |
| CDY13521 | Canola | cytosol | 61.49 | 61.88 |
| CDY39073 | Canola | cytosol | 61.49 | 61.88 |
| CDX73212 | Canola | cytosol | 59.01 | 59.01 |
| CDX87650 | Canola | cytosol | 57.76 | 57.76 |
| CDX93698 | Canola | cytosol | 55.9 | 57.69 |
| CDY40610 | Canola | cytosol | 55.28 | 57.05 |
| CDY40611 | Canola | cytosol | 52.17 | 56.0 |
| CDX93699 | Canola | cytosol | 54.66 | 55.0 |
| CDX77280 | Canola | cytosol | 53.42 | 54.09 |
| CDX80590 | Canola | cytosol | 54.04 | 54.04 |
| CDY16470 | Canola | cytosol | 52.17 | 52.83 |
| CDY69121 | Canola | cytosol | 42.86 | 52.67 |
| CDY03015 | Canola | cytosol | 48.45 | 51.66 |
| CDX89042 | Canola | cytosol | 50.31 | 50.94 |
| CDY04140 | Canola | cytosol | 46.58 | 47.17 |
| CDY17409 | Canola | cytosol | 45.96 | 46.54 |
| CDY45767 | Canola | cytosol | 44.1 | 46.1 |
| CDY14922 | Canola | cytosol | 46.58 | 44.64 |
| CDX96963 | Canola | cytosol | 46.58 | 39.68 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078EKW3 | EnsemblPlants:CDY01389 | ProteinID:CDY01389 | ProteinID:CDY01389.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00112371001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EDB8A3 | SEG:seg |
Description
BnaA07g11620D
Coordinates
chrLK031926:-:642525..643134
Molecular Weight (calculated)
18015.4 Da
IEP (calculated)
4.270
GRAVY (calculated)
-0.233
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKIILESS EGKSFEVDEA VALECQTIKN MIEDDCTDGG IPLANVNSAT LAKVIEYCKK HVEAAAEAHA GDKDTYGANE DIELKTWDEE FVKVDQPLLF
101: DLMLAANFLI IPGLLDLTTK TVADMMRGKT VLQIREIFHI KKDYTDAEEA EVRKENAWAF E
101: DLMLAANFLI IPGLLDLTTK TVADMMRGKT VLQIREIFHI KKDYTDAEEA EVRKENAWAF E
001: MAETKKMIIL KSSDGESFEV EEAVAVESQT IKHMIEDDCV DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS TENHELKTWD NDFVKVDHPT
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE
Arabidopsis Description
ASK3SKP1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL93]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.