CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY01389
CDY13521
CDY29370
CDY39073
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21760.1	CDY01389	AT1G20140.1	12169662
AT1G21760.1	CDY29370	AT1G20140.1	12169662
AT1G21760.1	CDY43408	AT1G20140.1	12169662
AT1G21760.1	CDY44209	AT1G20140.1	12169662
AT1G21760.1	CDY63159	AT1G20140.1	12169662
AT1G21760.1	CDY67544	AT1G20140.1	12169662
AT1G21760.1	CDY68971	AT1G20140.1	12169662
AT1G21760.1	CDX68112	AT1G75950.1	12169662
AT1G21760.1	CDX73212	AT1G75950.1	12169662
AT1G21760.1	CDX80590	AT1G75950.1	12169662
AT1G21760.1	CDX85931	AT1G75950.1	12169662
AT1G21760.1	CDX87650	AT1G75950.1	12169662
AT1G21760.1	CDY13521	AT1G75950.1	12169662
AT1G21760.1	CDY39073	AT1G75950.1	12169662
AT1G21760.1	CDX68112	AT1G75950.1	12795696
AT1G21760.1	CDX73212	AT1G75950.1	12795696
AT1G21760.1	CDX80590	AT1G75950.1	12795696
AT1G21760.1	CDX85931	AT1G75950.1	12795696
AT1G21760.1	CDX87650	AT1G75950.1	12795696
AT1G21760.1	CDY13521	AT1G75950.1	12795696
AT1G21760.1	CDY39073	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017949.1-P	Field mustard	cytosol	98.53	99.7
CDY08175	Canola	cytosol	99.12	98.26
AT1G21760.1	Thale cress	cytosol	88.56	92.07
KRH64638	Soybean	cytosol	78.01	80.61
KRH53264	Soybean	cytosol	77.71	80.55
PGSC0003DMT400002306	Potato	cytosol	72.73	75.84
VIT_18s0001g02630.t01	Wine grape	cytosol	72.43	75.3
Solyc11g012830.1.1	Tomato	cytosol	71.55	74.62
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	63.93	66.87
TraesCS2A01G303500.1	Wheat	cytosol	58.06	60.55
TraesCS2D01G302000.2	Wheat	cytosol	57.48	59.94
Os04t0431200-01	Rice	plastid	26.1	59.73
TraesCS2B01G320100.2	Wheat	cytosol	57.77	59.34
EES10826	Sorghum	cytosol	55.72	58.1
GSMUA_Achr6P17950_001	Banana	mitochondrion	26.39	57.32
Zm00001d003661_P001	Maize	plastid	32.84	54.11
Zm00001d025421_P001	Maize	cytosol	55.72	53.07
Zm00001d003662_P001	Maize	extracellular, mitochondrion	12.9	52.38
PGSC0003DMT400017163	Potato	cytosol	11.73	51.28
GSMUA_Achr6P17940_001	Banana	extracellular	11.44	40.21

Protein Annotations

EnsemblPlants:CDY04674	EnsemblPlantsGene:GSBRNA2T00119278001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF9	PFAM:PF12937
PFscan:PS50181	ProteinID:CDY04674	ProteinID:CDY04674.1	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EE9911
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

BnaC05g17120D

Coordinates

chrLK031956:+:749608..751849

Molecular Weight (calculated)

39316.5 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.277

Length

341 amino acids

Sequence
(BLAST)

001: MTSDALNIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VAPFGSTSSK PQFDPALIHR SLPDELLFEV FARMLPYDLG RAACVCRKWR YTVRNPVFWR
101: NACLKAWQTA GVIENYRILQ SKYDGSWRKM WLLRSRVRTD GIYVSRNTYI RAGIAEWKIT NPVHIVCYFR YIRFYPSGRF LYKNSSQKLK DVAKYMIFKS
201: SKADGLYRGT YTLSMTDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEGSSTE EDILGVVENW RDDETHNPDI PAVSHKRGMT
301: PFVFVPFEEA SNKKIALYIP LLVEQSVLNL PPEKMDYFVT G

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.