Factsheet for Solyc11g012830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002306	Potato	cytosol	97.55	97.55
PGSC0003DMT400017163	Potato	cytosol	18.35	76.92
KRH53264	Soybean	cytosol	76.76	76.29
VIT_18s0001g02630.t01	Wine grape	cytosol	75.84	75.61
KRH64638	Soybean	cytosol	76.15	75.45
AT1G21760.1	Thale cress	cytosol	73.7	73.48
Bra017949.1-P	Field mustard	cytosol	74.92	72.7
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	71.56	71.78
CDY04674	Canola	cytosol	74.62	71.55
CDY08175	Canola	cytosol	74.92	71.22
EES10826	Sorghum	cytosol	62.69	62.69
TraesCS2A01G303500.1	Wheat	cytosol	62.08	62.08
TraesCS2D01G302000.2	Wheat	cytosol	61.47	61.47
TraesCS2B01G320100.2	Wheat	cytosol	61.77	60.84
Zm00001d003661_P001	Maize	plastid	38.23	60.39
Zm00001d025421_P001	Maize	cytosol	62.39	56.98
Os04t0431200-01	Rice	plastid	25.38	55.7
GSMUA_Achr6P17950_001	Banana	mitochondrion	26.61	55.41
Zm00001d003662_P001	Maize	extracellular, mitochondrion	13.46	52.38
GSMUA_Achr6P17940_001	Banana	extracellular	12.84	43.3

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0006417	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009408	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538
GO:GO:0090406	InterPro:IPR001810	UniProt:K4D687	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR12874
PANTHER:PTHR12874:SF9	SMART:SM00256	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc11g012830.1	EnsemblPlants:Solyc11g012830.1.1	UniParc:UPI000276A111
SEG:seg	:	:	:	:	:

Description

F-box protein 7 [Source:Projected from Arabidopsis thaliana (AT1G21760) UniProtKB/Swiss-Prot;Acc:Q9XI00]

Coordinates

chr11:+:5628339..5636570

Molecular Weight (calculated)

37734.5 Da

IEP (calculated)

9.400

GRAVY (calculated)

-0.269

Length

327 amino acids

Sequence
(BLAST)

001: MASDYTVELA VELETAAQLR ASQFIFPHRP WLDLYGINVR PVAPFGSASS KQFVDPALIH RVLPDELLFE ILSKTTPYTL GKAACVCRKW RYTIRNPVFW
101: RNACLKAWQV SGLVENYKVL HLKYDGSWRK MWLLRPRIRT DGIYVSRNTY IRAGIAEWKI TNPVHLVCYY RYMRFYPSGR FLYKNSSQKV KDVAKYLNFR
201: ASKADCVFKG NYTLSEDKVE AALLYPGMRP TVLRFRLRLR GTTQGANNRM DLLALLTSGV NDNEVNGPDE DILGVVERWE EDETHNPDVP AISHKRGLTP
301: FVFVSFEEVE TSVLNLPVEK MDYYVPG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.