Factsheet for Bra017949.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21760.1	Bra012213.1-P	AT1G20140.1	12169662
AT1G21760.1	Bra012214.1-P	AT1G20140.1	12169662
AT1G21760.1	Bra012216.1-P	AT1G20140.1	12169662
AT1G21760.1	Bra025795.1-P	AT1G20140.1	12169662
AT1G21760.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G21760.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G21760.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G21760.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G21760.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G21760.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04674	Canola	cytosol	99.7	98.53
CDY08175	Canola	cytosol	100.0	97.97
AT1G21760.1	Thale cress	cytosol	89.91	92.38
KRH64638	Soybean	cytosol	79.23	80.91
KRH53264	Soybean	cytosol	78.93	80.85
PGSC0003DMT400002306	Potato	cytosol	73.89	76.15
VIT_18s0001g02630.t01	Wine grape	cytosol	73.59	75.61
Solyc11g012830.1.1	Tomato	cytosol	72.7	74.92
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	64.99	67.18
TraesCS2A01G303500.1	Wheat	cytosol	58.75	60.55
TraesCS2D01G302000.2	Wheat	cytosol	58.16	59.94
Os04t0431200-01	Rice	plastid	26.41	59.73
TraesCS2B01G320100.2	Wheat	cytosol	58.46	59.34
EES10826	Sorghum	cytosol	56.38	58.1
GSMUA_Achr6P17950_001	Banana	mitochondrion	26.71	57.32
Zm00001d003661_P001	Maize	plastid	33.23	54.11
Zm00001d025421_P001	Maize	cytosol	56.38	53.07
Zm00001d003662_P001	Maize	extracellular, mitochondrion	13.06	52.38
PGSC0003DMT400017163	Potato	cytosol	11.87	51.28
GSMUA_Achr6P17940_001	Banana	extracellular	11.57	40.21

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EnsemblPlantsGene:Bra017949	EnsemblPlants:Bra017949.1	EnsemblPlants:Bra017949.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006417
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408	GO:GO:0009409
GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0090406	InterPro:IPR001810	UniProt:M4DN62
PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR12874	PANTHER:PTHR12874:SF9	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI000253F144	:	:	:	:	:

Description

AT1G21760 (E=3e-172) ATFBP7, FBP7 | FBP7 (F-BOX PROTEIN 7)

Coordinates

chrA06:+:9021659..9023931

Molecular Weight (calculated)

38880.8 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.335

Length

337 amino acids

Sequence
(BLAST)

001: MTSDALNIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VAPFGSTSSK PQFDPALIHR SLPDELLFEV FARMLPYDLG RAACVCRKWR YTVRNPVFWR
101: NACLKAWQTA GVIENYRILQ SKYDGSWRKM WLLRSRVRTD GIYVSRNTYI RAGIAEWKIT NPVHIVCYFR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKS
201: SKADGLYRGT YTLSMTDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEGSSTE EDILGVVENW RDDETHNPDI PAVSHKRGMT
301: PFVFVPFEEA SNKKIALYVE QSVLNLPPEK MDYFVTG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.