CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025421_P001	Maize	cytosol	98.78	90.22
Zm00001d003661_P001	Maize	plastid	54.43	85.99
TraesCS2A01G303500.1	Wheat	cytosol	85.32	85.32
TraesCS2D01G302000.2	Wheat	cytosol	85.32	85.32
TraesCS2B01G320100.2	Wheat	cytosol	85.32	84.04
Zm00001d003662_P001	Maize	extracellular, mitochondrion	20.18	78.57
Os04t0431200-01	Rice	plastid	35.17	77.18
PGSC0003DMT400002306	Potato	cytosol	63.3	63.3
Solyc11g012830.1.1	Tomato	cytosol	62.69	62.69
KRH64638	Soybean	cytosol	62.08	61.52
KRH53264	Soybean	cytosol	61.16	60.79
VIT_18s0001g02630.t01	Wine grape	cytosol	60.86	60.67
AT1G21760.1	Thale cress	cytosol	60.24	60.06
Bra017949.1-P	Field mustard	cytosol	58.1	56.38
CDY04674	Canola	cytosol	58.1	55.72
CDY08175	Canola	cytosol	58.1	55.23
GSMUA_Achr6P17940_001	Banana	extracellular	14.07	47.42
PGSC0003DMT400017163	Potato	cytosol	8.87	37.18

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	EntrezGene:8080298	UniProt:C5Y8N2	EnsemblPlants:EES10826	ProteinID:EES10826
ProteinID:EES10826.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739
GO:GO:0006412	GO:GO:0006417	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009408	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0090406
InterPro:IPR001810	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR12874	PANTHER:PTHR12874:SF9	SMART:SM00256
EnsemblPlantsGene:SORBI_3006G082600	SUPFAM:SSF81383	unigene:Sbi.7148	UniParc:UPI0001A86FF3	RefSeq:XP_002446498.1	:

Description

hypothetical protein

Coordinates

chr6:+:45147719..45153345

Molecular Weight (calculated)

38022.0 Da

IEP (calculated)

9.192

GRAVY (calculated)

-0.285

Length

327 amino acids

Sequence
(BLAST)

001: MASSDISVDI RPDINSFDHF LSMRYIATDR PWLKLYGIRV QPVPPFSSLS YKPDPALIHH CLPDELMLEI FTRMSPYTLG RAACVCRKWK YTARNPTLWR
101: AACLKTWQRS GLEANYMMVR SLYDSSWRRM WLQRPRIRID GLYVSRNTYI HTGVTEWQFK KTVNVVCYYR YLRFFPSGKF LYKISPDKVK DAVKCMHFRA
201: SKADCVFKGD YILSEDGQIE MALLYPGHRY TLVRMRLRLR GTTVGANNRL DVLKILTTGV NATELQNWKG SILELVDGWE EDETHDPDVP AVSHSRGLSP
301: FVFVPFEEAD TSVLNLPVEK MDYYVPG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.