Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017949.1-P | Field mustard | cytosol | 92.38 | 89.91 |
| CDY04674 | Canola | cytosol | 92.07 | 88.56 |
| CDY08175 | Canola | cytosol | 92.38 | 88.08 |
| KRH53264 | Soybean | cytosol | 79.57 | 79.33 |
| KRH64638 | Soybean | cytosol | 78.96 | 78.48 |
| VIT_18s0001g02630.t01 | Wine grape | cytosol | 75.3 | 75.3 |
| PGSC0003DMT400002306 | Potato | cytosol | 74.7 | 74.92 |
| Solyc11g012830.1.1 | Tomato | cytosol | 73.48 | 73.7 |
| GSMUA_Achr6P07230_001 | Banana | cytosol, plastid | 66.16 | 66.56 |
| TraesCS2A01G303500.1 | Wheat | cytosol | 60.98 | 61.16 |
| TraesCS2D01G302000.2 | Wheat | cytosol | 60.37 | 60.55 |
| EES10826 | Sorghum | cytosol | 60.06 | 60.24 |
| TraesCS2B01G320100.2 | Wheat | cytosol | 60.67 | 59.94 |
| Os04t0431200-01 | Rice | plastid | 26.83 | 59.06 |
| Zm00001d003661_P001 | Maize | plastid | 35.67 | 56.52 |
| GSMUA_Achr6P17950_001 | Banana | mitochondrion | 26.83 | 56.05 |
| Zm00001d025421_P001 | Maize | cytosol | 60.06 | 55.03 |
| Zm00001d003662_P001 | Maize | extracellular, mitochondrion | 13.72 | 53.57 |
| PGSC0003DMT400017163 | Potato | cytosol | 11.59 | 48.72 |
| GSMUA_Achr6P17940_001 | Banana | extracellular | 11.59 | 39.18 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | EntrezGene:838780 | ProteinID:AAD41431.1 | ProteinID:AEE30153.1 | EMBL:AK228033 |
| ArrayExpress:AT1G21760 | EnsemblPlantsGene:AT1G21760 | RefSeq:AT1G21760 | TAIR:AT1G21760 | RefSeq:AT1G21760-TAIR-G | EnsemblPlants:AT1G21760.1 |
| TAIR:AT1G21760.1 | Symbol:ATFBP7 | Unigene:At.71064 | EMBL:BT006427 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0090406 | InterPro:IPR001810 |
| RefSeq:NP_564150.1 | PFAM:PF12937 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000025 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006079 | PO:PO:0007017 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50181 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF9 | UniProt:Q9XI00 | SMART:SM00256 | SUPFAM:SSF81383 |
| UniParc:UPI00000A2EEB | : | : | : | : | : |
Description
SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
Coordinates
chr1:+:7649194..7651816
Molecular Weight (calculated)
38044.8 Da
IEP (calculated)
9.381
GRAVY (calculated)
-0.359
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.