Factsheet for GSMUA_Achr6P17950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017163	Potato	cytosol	23.57	47.44
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	70.7	34.05
VIT_18s0001g02630.t01	Wine grape	cytosol	59.87	28.66
PGSC0003DMT400002306	Potato	cytosol	57.32	27.52
AT1G21760.1	Thale cress	cytosol	56.05	26.83
Bra017949.1-P	Field mustard	cytosol	57.32	26.71
KRH64638	Soybean	cytosol	56.05	26.67
Solyc11g012830.1.1	Tomato	cytosol	55.41	26.61
CDY04674	Canola	cytosol	57.32	26.39
CDY08175	Canola	cytosol	57.32	26.16
KRH53264	Soybean	cytosol	54.14	25.84
GSMUA_Achr6P17940_001	Banana	extracellular	3.18	5.15

Protein Annotations

EnsemblPlants:GSMUA_Achr6P17950_001	EnsemblPlants:GSMUA_Achr6T17950_001	EnsemblPlantsGene:GSMUA_Achr6G17950_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF9
PFAM:PF12937	SUPFAM:SSF81383	UniParc:UPI000296D0B5	UniProt:M0T7Z3	MapMan:19.2.2.8.1.4.6	:

Description

F-box protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17950_001]

Coordinates

chr6:-:12095617..12099683

Molecular Weight (calculated)

18125.2 Da

IEP (calculated)

10.530

GRAVY (calculated)

-0.236

Length

157 amino acids

Sequence
(BLAST)

001: MSWITQRKTK VLKYISIPVP SELGPFSRLG TVQFIGTERP WLNLYGNRVR PVAPFGSISS KPFSDPALIH QCLPDELLLA KLGKLHIPYA MGRAACVCRK
101: WRYTICNPNL WRDACLRIWQ SSGAEANYRI VQSLYDGSWR KMWIQRPRIR NDGLYVS

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.