Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002306 | Potato | cytosol | 72.09 | 71.87 |
| Solyc11g012830.1.1 | Tomato | cytosol | 71.78 | 71.56 |
| GSMUA_Achr6P17950_001 | Banana | mitochondrion | 34.05 | 70.7 |
| KRH64638 | Soybean | cytosol | 70.25 | 69.39 |
| VIT_18s0001g02630.t01 | Wine grape | cytosol | 69.63 | 69.21 |
| KRH53264 | Soybean | cytosol | 69.33 | 68.69 |
| AT1G21760.1 | Thale cress | cytosol | 66.56 | 66.16 |
| Bra017949.1-P | Field mustard | cytosol | 67.18 | 64.99 |
| CDY04674 | Canola | cytosol | 66.87 | 63.93 |
| CDY08175 | Canola | cytosol | 67.18 | 63.66 |
| GSMUA_Achr6P17940_001 | Banana | extracellular | 15.03 | 50.52 |
| PGSC0003DMT400017163 | Potato | cytosol | 11.66 | 48.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P07230_001 | EnsemblPlants:GSMUA_Achr6T07230_001 | EnsemblPlantsGene:GSMUA_Achr6G07230_001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF9 |
| PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI00029628E7 |
| UniProt:M0T4X2 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
F-box protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr6G07230_001]
Coordinates
chr6:+:4855251..4860194
Molecular Weight (calculated)
37583.2 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.282
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDVSIPVP SEFGTFSRLR TMQFVGTERP WLNLYGNRIR PVAPFGSVSS TPFTDPSLIH RCLPDELLLE VFSRMNPYTL GRAACVCRKW RYAIRNPNLW
101: RNACLKIWQA SGVETNYRIV HSLYDGSWRK MWVWRPRIRN DGLYVSRNTY IRTGVAEWKV TNPVHVVCYY RYLRFYPSGK FLYKISSQKV KDVVKCMNRA
201: SKADCVFKGD YILTEDQVET ALLYPGLRYT LLRMRLRLRG TTLGANNRLD VLKLVTTGVN ESEVRNHGDD MLGIVEGWEE DETHDPDVPA ISHGRGLTPF
301: VFVSFEEAET SVLNLPVDKM DYFVPG
101: RNACLKIWQA SGVETNYRIV HSLYDGSWRK MWVWRPRIRN DGLYVSRNTY IRTGVAEWKV TNPVHVVCYY RYLRFYPSGK FLYKISSQKV KDVVKCMNRA
201: SKADCVFKGD YILTEDQVET ALLYPGLRYT LLRMRLRLRG TTLGANNRLD VLKLVTTGVN ESEVRNHGDD MLGIVEGWEE DETHDPDVPA ISHGRGLTPF
301: VFVSFEEAET SVLNLPVDKM DYFVPG
001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
Arabidopsis Description
SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.