Factsheet for PGSC0003DMT400017163

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P17950_001	Banana	mitochondrion	47.44	23.57
Os04t0431200-01	Rice	plastid	42.31	22.15
Solyc11g012830.1.1	Tomato	cytosol	76.92	18.35
PGSC0003DMT400002306	Potato	cytosol	76.92	18.35
VIT_18s0001g02630.t01	Wine grape	cytosol	53.85	12.8
Bra017949.1-P	Field mustard	cytosol	51.28	11.87
CDY04674	Canola	cytosol	51.28	11.73
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	48.72	11.66
CDY08175	Canola	cytosol	51.28	11.63
AT1G21760.1	Thale cress	cytosol	48.72	11.59
KRH53264	Soybean	cytosol	48.72	11.55
KRH64638	Soybean	cytosol	48.72	11.52
TraesCS2B01G320100.2	Wheat	cytosol	42.31	9.94
TraesCS2A01G303500.1	Wheat	cytosol	41.03	9.79
TraesCS2D01G302000.2	Wheat	cytosol	39.74	9.48
EES10826	Sorghum	cytosol	37.18	8.87
Zm00001d025421_P001	Maize	cytosol	37.18	8.1
GSMUA_Achr6P17940_001	Banana	extracellular	5.13	4.12
Zm00001d003662_P001	Maize	extracellular, mitochondrion	1.28	1.19
Zm00001d003661_P001	Maize	plastid	1.28	0.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400017163

EnsemblPlantsGene:PGSC0003DMG400006698

PGSC:PGSC0003DMG400006698

UniParc:UPI0002968FFB

UniProt:M1A8M6

MapMan:35.2

Description

F-box protein 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400006698]

Coordinates

chr4:+:51839801..51840357

Molecular Weight (calculated)

8923.6 Da

IEP (calculated)

4.282

GRAVY (calculated)

0.203

Length

78 amino acids

Sequence
(BLAST)

1: MSITYLADYI VELAVELETT AQLRDSQFIF PQRSWLDLYG INVRPVAHFG SASSKQFLDP ALIHQVLHDE LLFEVSEV

Best Arabidopsis Sequence Match ( AT1G21760.2 )
(BLAST)

001: MIGDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.