Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G302000.2 | Wheat | cytosol | 99.08 | 99.08 |
TraesCS2B01G320100.2 | Wheat | cytosol | 98.78 | 97.29 |
EES10826 | Sorghum | cytosol | 85.32 | 85.32 |
Os04t0431200-01 | Rice | plastid | 36.09 | 79.19 |
Zm00001d025421_P001 | Maize | cytosol | 85.32 | 77.93 |
Zm00001d003661_P001 | Maize | plastid | 48.62 | 76.81 |
Zm00001d003662_P001 | Maize | extracellular, mitochondrion | 18.65 | 72.62 |
KRH64638 | Soybean | cytosol | 63.0 | 62.42 |
PGSC0003DMT400002306 | Potato | cytosol | 62.39 | 62.39 |
Solyc11g012830.1.1 | Tomato | cytosol | 62.08 | 62.08 |
KRH53264 | Soybean | cytosol | 62.08 | 61.7 |
AT1G21760.1 | Thale cress | cytosol | 61.16 | 60.98 |
VIT_18s0001g02630.t01 | Wine grape | cytosol | 60.24 | 60.06 |
Bra017949.1-P | Field mustard | cytosol | 60.55 | 58.75 |
CDY04674 | Canola | cytosol | 60.55 | 58.06 |
CDY08175 | Canola | cytosol | 60.55 | 57.56 |
GSMUA_Achr6P17940_001 | Banana | extracellular | 15.29 | 51.55 |
PGSC0003DMT400017163 | Potato | cytosol | 9.79 | 41.03 |
Protein Annotations
Gene3D:1.20.1280.50 | MapMan:19.2.2.8.1.4.6 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
GO:GO:0005739 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009408 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0019538 |
GO:GO:0090406 | InterPro:IPR001810 | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF9 |
SMART:SM00256 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS2A01G303500 | EnsemblPlants:TraesCS2A01G303500.1 | : | : |
Description
No Description!
Coordinates
chr2A:+:520553641..520562696
Molecular Weight (calculated)
37856.6 Da
IEP (calculated)
9.479
GRAVY (calculated)
-0.333
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPDISFDI RPEFNSFDHL RSTGYISTDR PWLKLYGIRV PPVSPFNSLS STPDLALIHQ CLPDELLIEI FGRMSPYTLG RAACVCRKWK YTTRNPTFWR
101: NACLKTWQRN GIEANFRMVQ SLYDSSWRKM WVQRPRIRID GLYVSRNTYI HTGITEWQFK KTVNVVCYYR YLRFFPTGKF LYKISPQKVK DVVKCMHLRA
201: SKGDSVFKGD YTLSGDGQIE MALLYPGHRY TLVRMRLRVR GTTIGANNRL DVLKILTTGV NGTELGNWKG NILELVEDWE ENETHDPDVP AVSHSRGLTP
301: FVFVPFEEAD TSVLNLPVEK MDYFVPG
101: NACLKTWQRN GIEANFRMVQ SLYDSSWRKM WVQRPRIRID GLYVSRNTYI HTGITEWQFK KTVNVVCYYR YLRFFPTGKF LYKISPQKVK DVVKCMHLRA
201: SKGDSVFKGD YTLSGDGQIE MALLYPGHRY TLVRMRLRVR GTTIGANNRL DVLKILTTGV NGTELGNWKG NILELVEDWE ENETHDPDVP AVSHSRGLTP
301: FVFVPFEEAD TSVLNLPVEK MDYFVPG
001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
Arabidopsis Description
SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.