CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64638	Soybean	cytosol	96.96	96.67
AT1G21760.1	Thale cress	cytosol	79.33	79.57
VIT_18s0001g02630.t01	Wine grape	cytosol	78.72	78.96
Bra017949.1-P	Field mustard	cytosol	80.85	78.93
CDY04674	Canola	cytosol	80.55	77.71
CDY08175	Canola	cytosol	80.85	77.33
PGSC0003DMT400002306	Potato	cytosol	76.29	76.76
Solyc11g012830.1.1	Tomato	cytosol	76.29	76.76
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	68.69	69.33
TraesCS2A01G303500.1	Wheat	cytosol	61.7	62.08
TraesCS2D01G302000.2	Wheat	cytosol	61.09	61.47
EES10826	Sorghum	cytosol	60.79	61.16
TraesCS2B01G320100.2	Wheat	cytosol	61.4	60.84
Os04t0431200-01	Rice	plastid	26.75	59.06
Zm00001d003661_P001	Maize	plastid	37.08	58.94
Zm00001d025421_P001	Maize	cytosol	60.79	55.87
GSMUA_Achr6P17950_001	Banana	mitochondrion	25.84	54.14
Zm00001d003662_P001	Maize	extracellular, mitochondrion	13.37	52.38
PGSC0003DMT400017163	Potato	cytosol	11.55	48.72
GSMUA_Achr6P17940_001	Banana	extracellular	13.07	44.33

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100786704	MapMan:19.2.2.8.1.4.6	EMBL:ACUP02003457	EMBL:BT093581	UniProt:C6T7Z2
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_06G115200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	EnsemblPlants:KRH53264	ProteinID:KRH53264	ProteinID:KRH53264.1	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR12874	PANTHER:PTHR12874:SF9	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0001B15D94	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:9377429..9384774

Molecular Weight (calculated)

37645.5 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.190

Length

329 amino acids

Sequence
(BLAST)

001: MASASDFALA VSSELESVLR LKTVNYFVTR RPWLDLYGVN VRPVAPVGSA SRRPYVDPAL IHRSLPDELL FEVFARMTPY DLGKASCVCR KWKYTIRNPV
101: FWRNACLKAW QLFGIVENYK ILQSKYDGSW RKMWLLRPRL RTDGLYVSRN TYIRAGVAEW KITNPVHVVC YFRYLRFFPS GRFLYKNSSQ KIKDVAKCMN
201: FRSSKIDCVF GGHYTLSDDK VEAAVLYPGM RPTVLRIRLR LRGTTTGANN RMDLISLVTS GVNSSEASAP EEDILGVVEG WQDDETHNPD VPAVSHKRGM
301: TPFVFVPFEE VETSVLNLPV EKMDYFVPG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.