Factsheet for PGSC0003DMT400002306

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012830.1.1	Tomato	cytosol	97.55	97.55
PGSC0003DMT400017163	Potato	cytosol	18.35	76.92
KRH64638	Soybean	cytosol	77.06	76.36
KRH53264	Soybean	cytosol	76.76	76.29
VIT_18s0001g02630.t01	Wine grape	cytosol	75.84	75.61
AT1G21760.1	Thale cress	cytosol	74.92	74.7
Bra017949.1-P	Field mustard	cytosol	76.15	73.89
CDY04674	Canola	cytosol	75.84	72.73
CDY08175	Canola	cytosol	76.15	72.38
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	71.87	72.09
EES10826	Sorghum	cytosol	63.3	63.3
TraesCS2A01G303500.1	Wheat	cytosol	62.39	62.39
TraesCS2D01G302000.2	Wheat	cytosol	61.77	61.77
TraesCS2B01G320100.2	Wheat	cytosol	62.08	61.14
Zm00001d003661_P001	Maize	plastid	38.53	60.87
Zm00001d025421_P001	Maize	cytosol	63.0	57.54
GSMUA_Achr6P17950_001	Banana	mitochondrion	27.52	57.32
Os04t0431200-01	Rice	plastid	25.99	57.05
Zm00001d003662_P001	Maize	extracellular, mitochondrion	13.46	52.38
GSMUA_Achr6P17940_001	Banana	extracellular	12.84	43.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400002306	EnsemblPlantsGene:PGSC0003DMG400000884	EntrezGene:102595125	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF9
PFAM:PF12937	PFscan:PS50181	PGSC:PGSC0003DMG400000884	RefSeq:XP_006351906.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI000294B49A	UniProt:M0ZJX0	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000884]

Coordinates

chr11:-:11101659..11109756

Molecular Weight (calculated)

37804.5 Da

IEP (calculated)

9.416

GRAVY (calculated)

-0.284

Length

327 amino acids

Sequence
(BLAST)

001: MTSDYTVELA VELETAARLR ASQFIFPQRP WLDLYGINVR PVAPFGSASS KQFVDPALIH RVLPDELLFE ILSKTTPYTL GRAACVCRKW RYTIRNPVFW
101: RNACLKAWQV SGLVENYKVL QLKYDGSWRK MWLLRPRIRT DGIYVSRNTY IRAGVAEWKI TNPVHLVCYY RYMRFYPSGR FLYKNSSQKV KDVAKYLNFR
201: ASKADCVFKG NYTLSEDKVE AALLYPGTRP TVLRFRLRLR GTTQGANNRM DLLALLTSGV NDNEVNCPDE DILGVVERWE EDETHNPDVP AISHKRGLTP
301: FVFVSFEEVE TSVLNLPVEK MDYYVPG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.