CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53264	Soybean	cytosol	96.67	96.96
Bra017949.1-P	Field mustard	cytosol	80.91	79.23
VIT_18s0001g02630.t01	Wine grape	cytosol	78.48	78.96
AT1G21760.1	Thale cress	cytosol	78.48	78.96
CDY04674	Canola	cytosol	80.61	78.01
CDY08175	Canola	cytosol	80.91	77.62
PGSC0003DMT400002306	Potato	cytosol	76.36	77.06
Solyc11g012830.1.1	Tomato	cytosol	75.45	76.15
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	69.39	70.25
TraesCS2A01G303500.1	Wheat	cytosol	62.42	63.0
TraesCS2D01G302000.2	Wheat	cytosol	61.82	62.39
EES10826	Sorghum	cytosol	61.52	62.08
TraesCS2B01G320100.2	Wheat	cytosol	62.12	61.75
Zm00001d003661_P001	Maize	plastid	37.27	59.42
Os04t0431200-01	Rice	plastid	26.36	58.39
Zm00001d025421_P001	Maize	cytosol	61.52	56.7
GSMUA_Achr6P17950_001	Banana	mitochondrion	26.67	56.05
Zm00001d003662_P001	Maize	extracellular, mitochondrion	13.03	51.19
PGSC0003DMT400017163	Potato	cytosol	11.52	48.72
GSMUA_Achr6P17940_001	Banana	extracellular	13.03	44.33

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100800263	MapMan:19.2.2.8.1.4.6	UniProt:A0A0R0KCA9	EMBL:ACUP02002770	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_04G247500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
EnsemblPlants:KRH64638	ProteinID:KRH64638	ProteinID:KRH64638.1	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR12874
PANTHER:PTHR12874:SF9	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0003DEBCA5	:	:

Description

hypothetical protein

Coordinates

chr4:-:51459987..51467255

Molecular Weight (calculated)

37631.2 Da

IEP (calculated)

9.494

GRAVY (calculated)

-0.218

Length

330 amino acids

Sequence
(BLAST)

001: MASGSDFALA VSSELESVLR LETVNYFVTR RPWLDLYGVN VRPVAPVGSA SRRPYVDPAL IHRSLPDELL FEVFARMTPY DLGRASCVCR KWKYTIRNPV
101: FWRNACLKAW QLSGIVENYR ILQSKYDGSW RKMWLSRPRL RTDGLYVSRN TYIRAGVAEW KITNPVHVVC YFRYLRFFPS GRFLYKNSSQ KVKDVAKCMN
201: FRSSKADCVF GGHYTLSDDK VVEAAVLYPG MRPTVLRIRL RIRGTTSGAN NRMDLISLVT SGVNSSEASA PEEDILGVVE GWQDDETHNP DVPAVSHKRG
301: MTPFVFVPFE EVETSVLNLP VEKMDYFVPG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.