Factsheet for VIT_18s0001g02630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21760.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662
AT1G21760.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53264	Soybean	cytosol	78.96	78.72
KRH64638	Soybean	cytosol	78.96	78.48
PGSC0003DMT400002306	Potato	cytosol	75.61	75.84
Solyc11g012830.1.1	Tomato	cytosol	75.61	75.84
AT1G21760.1	Thale cress	cytosol	75.3	75.3
Bra017949.1-P	Field mustard	cytosol	75.61	73.59
CDY04674	Canola	cytosol	75.3	72.43
CDY08175	Canola	cytosol	75.61	72.09
GSMUA_Achr6P07230_001	Banana	cytosol, plastid	69.21	69.63
EES10826	Sorghum	cytosol	60.67	60.86
TraesCS2A01G303500.1	Wheat	cytosol	60.06	60.24
Zm00001d003661_P001	Maize	plastid	37.8	59.9
GSMUA_Achr6P17950_001	Banana	mitochondrion	28.66	59.87
Os04t0431200-01	Rice	plastid	27.13	59.73
TraesCS2D01G302000.2	Wheat	cytosol	59.45	59.63
TraesCS2B01G320100.2	Wheat	cytosol	59.76	59.04
Zm00001d025421_P001	Maize	cytosol	60.67	55.59
PGSC0003DMT400017163	Potato	cytosol	12.8	53.85
Zm00001d003662_P001	Maize	extracellular, mitochondrion	13.11	51.19
GSMUA_Achr6P17940_001	Banana	extracellular	12.5	42.27

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100247171	wikigene:100247171	MapMan:19.2.2.8.1.4.6	ProteinID:CCB45481	ProteinID:CCB45481.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H0K9	EMBL:FN595227	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005739	GO:GO:0006412	GO:GO:0006417	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009408	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0019538
GO:GO:0090406	InterPro:IPR001810	EntrezGene:LOC100247171	wikigene:LOC100247171	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR12874	PANTHER:PTHR12874:SF9	SMART:SM00256	SUPFAM:SSF81383	TIGR:TC56086	UniParc:UPI000210A04C
ArrayExpress:VIT_18s0001g02630	EnsemblPlantsGene:VIT_18s0001g02630	EnsemblPlants:VIT_18s0001g02630.t01	unigene:Vvi.10692	RefSeq:XP_003634429	RefSeq:XP_003634429.1

Description

No Description!

Coordinates

chr18:+:2855229..2860609

Molecular Weight (calculated)

37729.3 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.244

Length

328 amino acids

Sequence
(BLAST)

001: MASDFALKVP PELEAESRLR TVQYFVTHRP WLDLYGVHVR PVAPFGSASS KPFVDPALIH RCLPDELLSE VFARMTPYTL GRAACVCRKW RYTIRNPVFW
101: RSACLKAWQL SGVVENYKIL QSRYESSWRK MWLLRPRVRT DGLYVSRNTY IRAGVAEWRV TNPVHVVCYF RYIRFFPSGR FLYKNSSQKV KDVVKCMNSR
201: ASKADCVFSG HYTLSDDKIE AAVLYPGMRP TVWRIRLSLQ EEQQQGLTIG WMLLSLVTSG VSDNEVNGPD EDILGVVEGW EEDETHNPDV PAVSHKRGLK
301: AFVFVPFEEV ETSDLNLPVD KMDYYVAG

Best Arabidopsis Sequence Match ( AT1G21760.1 )
(BLAST)

001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG

Arabidopsis Description

SKIP32F-box protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.