Factsheet for Bra012216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003700.1-P
Bra004092.1-P
Bra004220.1-P
Bra007086.1-P
Bra013776.1-P
Bra014407.1-P
Bra014802.1-P
Bra015474.1-P
Bra017339.1-P
Bra017949.1-P
Bra020714.1-P
Bra024867.1-P
Bra024868.1-P
Bra025177.1-P
Bra026645.1-P
Bra028246.1-P
Bra029225.1-P
Bra030639.1-P
Bra034004.1-P
Bra034324.1-P
Bra036183.1-P
Bra036257.1-P
Bra036266.1-P
Bra036353.1-P
Bra037508.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20140.1	Bra015474.1-P	AT1G06110.1	12169662
AT1G20140.1	Bra030639.1-P	AT1G06110.1	12169662
AT1G20140.1	Bra015474.1-P	AT1G06110.1	21798944
AT1G20140.1	Bra030639.1-P	AT1G06110.1	21798944
AT1G20140.1	Bra017949.1-P	AT1G21760.1	12169662
AT1G20140.1	Bra004092.1-P	AT1G67340.1	12169662
AT1G20140.1	Bra004220.1-P	AT1G67340.1	12169662
AT1G20140.1	Bra034004.1-P	AT1G67340.1	12169662
AT1G20140.1	Bra003700.1-P	AT1G76920.1	12795696
AT1G20140.1	Bra024867.1-P	AT2G01620.1	12795696
AT1G20140.1	Bra024868.1-P	AT2G01620.1	12795696
AT1G20140.1	Bra026645.1-P	AT2G01620.1	12795696
AT1G20140.1	Bra017339.1-P	AT3G26000.1	12795696
AT1G20140.1	Bra025177.1-P	AT3G26000.1	12795696
AT1G20140.1	Bra036353.1-P	AT3G26000.1	12795696
AT1G20140.1	Bra014407.1-P	AT3G62230.1	12169662
AT1G20140.1	Bra036266.1-P	AT4G02440.1	16412087
AT1G20140.1	Bra036266.1-P	AT4G02440.1	21798944
AT1G20140.1	Bra000874.1-P	AT4G02570.1	16412087
AT1G20140.1	Bra036257.1-P	AT4G02570.1	16412087
AT1G20140.1	Bra013776.1-P	AT4G24210.1	15161962
AT1G20140.1	Bra028246.1-P	AT5G39450.1	21798944
AT1G20140.1	Bra020714.1-P	AT5G48170.1	15161962
AT1G20140.1	Bra036183.1-P	AT5G48170.1	15161962
AT1G20140.1	Bra037508.1-P	AT5G48170.1	15161962
AT2G25700.1	Bra034324.1-P	AT2G04230.1	21798944
AT2G25700.1	Bra017339.1-P	AT3G26000.1	12795696
AT2G25700.1	Bra025177.1-P	AT3G26000.1	12795696
AT2G25700.1	Bra036353.1-P	AT3G26000.1	12795696
AT2G25700.1	Bra007086.1-P	AT3G54650.1	19277118
AT2G25700.1	Bra014802.1-P	AT3G54650.1	19277118
AT2G25700.1	Bra000874.1-P	AT4G02570.1	16412087
AT2G25700.1	Bra036257.1-P	AT4G02570.1	16412087
AT2G25700.1	Bra029225.1-P	AT4G10400.1	21798944
AT2G25700.1	Bra013776.1-P	AT4G24210.1	15161962
AT2G25700.1	Bra020714.1-P	AT5G48170.1	15161962
AT2G25700.1	Bra036183.1-P	AT5G48170.1	15161962
AT2G25700.1	Bra037508.1-P	AT5G48170.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01389	Canola	cytosol	93.12	92.55
Bra012214.1-P	Field mustard	cytosol	71.88	85.82
Bra025795.1-P	Field mustard	cytosol	70.62	70.19
AT1G20140.1	Thale cress	cytosol	68.12	66.87
AT2G25700.1	Thale cress	cytosol	68.12	66.87
Bra012213.1-P	Field mustard	cytosol	59.38	62.5
Bra008231.1-P	Field mustard	cytosol	60.0	60.0
Bra003735.1-P	Field mustard	cytosol	58.75	58.75
Bra018756.1-P	Field mustard	cytosol	55.62	57.05
Bra015801.1-P	Field mustard	cytosol	56.88	56.52
Bra018757.1-P	Field mustard	cytosol	51.88	51.88
Bra014159.1-P	Field mustard	cytosol	48.12	48.43
Bra014519.1-P	Field mustard	cytosol	46.88	47.17
Bra017397.1-P	Field mustard	cytosol	45.62	45.91
Bra039504.1-P	Field mustard	cytosol	46.88	44.38

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra012216	EnsemblPlants:Bra012216.1	EnsemblPlants:Bra012216.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4D6V6
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI00025415FF	SEG:seg	:	:

Description

AT2G25700 (E=9e-048) ASK3 | ASK3 (ARABIDOPSIS SKP1-LIKE 3); protein binding / ubiquitin-protein ligase

Coordinates

chrA07:-:9262289..9262849

Molecular Weight (calculated)

17827.3 Da

IEP (calculated)

4.283

GRAVY (calculated)

-0.180

Length

160 amino acids

Sequence
(BLAST)

001: MSKKIIFESS EGESFEVDEA VALECQTIKN MIEDDCTDGG IPLANVNSAT LSKVIDYCKK HVEAAAAAGA NAGDKDIYGA NKDIELKTWD EEFVKVDQPL
101: LFDLMLAANF LIIPGLLDLT CKTMMRGKTV LQIREIFHIK KDYTDAEEAE VRKENAWAFE

Best Arabidopsis Sequence Match ( AT2G25700.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEV EEAVAVESQT IKHMIEDDCV DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS TENHELKTWD NDFVKVDHPT
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE

Arabidopsis Description

ASK3SKP1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL93]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.