Factsheet for Bra017397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04140	Canola	cytosol	100.0	100.0
Bra018756.1-P	Field mustard	cytosol	52.2	53.21
Bra008231.1-P	Field mustard	cytosol	52.83	52.5
Bra003735.1-P	Field mustard	cytosol	52.2	51.88
Bra015801.1-P	Field mustard	cytosol	51.57	50.93
Bra012214.1-P	Field mustard	cytosol	42.14	50.0
Bra039504.1-P	Field mustard	cytosol	52.83	49.7
Bra014159.1-P	Field mustard	cytosol	49.69	49.69
Bra025795.1-P	Field mustard	cytosol	49.69	49.07
Bra014519.1-P	Field mustard	cytosol	49.06	49.06
Bra018757.1-P	Field mustard	cytosol	48.43	48.12
Bra012213.1-P	Field mustard	cytosol	44.03	46.05
Bra012216.1-P	Field mustard	cytosol	45.91	45.62

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra017397	EnsemblPlants:Bra017397.1	EnsemblPlants:Bra017397.1-P	ncoils:Coil
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
UniProt:M4DLL6	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002542255	:	:

Description

AT1G10230 (E=4e-045) ASK18 | ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase

Coordinates

chrA09:-:14985282..14985761

Molecular Weight (calculated)

18043.3 Da

IEP (calculated)

4.225

GRAVY (calculated)

-0.379

Length

159 amino acids

Sequence
(BLAST)

001: MSESNKKFTL ISSDEEPFEV SEAVAREFEI VAHMLEDGCS GSSIPIKTVN SNILGKVIEY CKKHVEVGNI EGNSEEAKKE LEEFDKNFIA VEMETLFSLI
101: LAANYLNVKG LLDIGCQKVA DTIKDMEPEE VRSIFKIQND YTPAEEEEVR KENIWAFER

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.