Factsheet for Bra014519.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003518.1-P
Bra003700.1-P
Bra007086.1-P
Bra007720.1-P
Bra014378.1-P
Bra014802.1-P
Bra029137.1-P
Bra030038.1-P
Bra032820.1-P
Bra036257.1-P
Bra036266.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21850.1	Bra030038.1-P	AT1G27340.1	12795696
AT3G21850.1	Bra032820.1-P	AT1G27340.1	12795696
AT3G21850.1	Bra003700.1-P	AT1G76920.1	12795696
AT3G21850.1	Bra003518.1-P	AT3G62980.1	12795696
AT3G21850.1	Bra007720.1-P	AT3G62980.1	12795696
AT3G21850.1	Bra014378.1-P	AT3G62980.1	12795696
AT3G21850.1	Bra036266.1-P	AT4G02440.1	16412087
AT3G21850.1	Bra029137.1-P	AT5G52120.1	12795696
AT3G21860.1	Bra007086.1-P	AT3G54650.1	19277118
AT3G21860.1	Bra014802.1-P	AT3G54650.1	19277118
AT3G21860.1	Bra000874.1-P	AT4G02570.1	16412087
AT3G21860.1	Bra036257.1-P	AT4G02570.1	16412087

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89042	Canola	cytosol	99.37	99.37
Bra018756.1-P	Field mustard	cytosol	61.64	62.82
Bra008231.1-P	Field mustard	cytosol	62.89	62.5
Bra003735.1-P	Field mustard	cytosol	62.89	62.5
Bra015801.1-P	Field mustard	cytosol	62.89	62.11
AT3G21840.1	Thale cress	cytosol	48.43	61.6
AT3G21860.1	Thale cress	cytosol	58.49	61.18
AT3G21850.1	Thale cress	cytosol	57.23	59.48
Bra018757.1-P	Field mustard	cytosol	59.75	59.38
AT3G53060.1	Thale cress	cytosol	30.82	57.65
AT3G21830.1	Thale cress	cytosol	53.46	55.92
AT3G60020.1	Thale cress	cytosol	53.46	55.56
Bra012214.1-P	Field mustard	cytosol	45.28	53.73
Bra014159.1-P	Field mustard	cytosol	53.46	53.46
Bra025795.1-P	Field mustard	cytosol	52.83	52.17
Bra017397.1-P	Field mustard	cytosol	49.06	49.06
Bra039504.1-P	Field mustard	cytosol	50.31	47.34
Bra012216.1-P	Field mustard	cytosol	47.17	46.88
Bra012213.1-P	Field mustard	cytosol	42.77	44.74

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EnsemblPlantsGene:Bra014519	EnsemblPlants:Bra014519.1	EnsemblPlants:Bra014519.1-P	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M4DDF1
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002543DEA	SEG:seg	:	:

Description

AT1G75950 (E=6e-044) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase

Coordinates

chrA04:+:1176888..1177367

Molecular Weight (calculated)

17583.5 Da

IEP (calculated)

3.873

GRAVY (calculated)

-0.248

Length

159 amino acids

Sequence
(BLAST)

001: MSKKIMLKSS DGESFEVEEE VARQSQTLAN LIEDNCADGE IPIANVTSKI LGMVVEYCKK HVVVVDGGDD SSSSSTSEED LKKWDADFMQ IDQSTMFDLI
101: LAANYLNVAS LLDLATQTVA DMIAACKDAA EIRAKFGIEN DFTPEEEEEI VKENQWAFE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.