Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014519.1-P | Field mustard | cytosol | 99.37 | 99.37 |
| CDY69121 | Canola | cytosol | 79.87 | 96.95 |
| CDX68112 | Canola | cytosol | 61.64 | 64.9 |
| CDX85931 | Canola | cytosol | 61.64 | 64.9 |
| CDY40611 | Canola | cytosol | 60.38 | 64.0 |
| CDY40610 | Canola | cytosol | 61.64 | 62.82 |
| CDX93698 | Canola | cytosol | 61.64 | 62.82 |
| CDX87650 | Canola | cytosol | 63.52 | 62.73 |
| CDY39073 | Canola | cytosol | 62.89 | 62.5 |
| CDY13521 | Canola | cytosol | 62.89 | 62.5 |
| CDX73212 | Canola | cytosol | 62.89 | 62.11 |
| AT3G21840.1 | Thale cress | cytosol | 48.43 | 61.6 |
| AT3G21860.1 | Thale cress | cytosol | 58.49 | 61.18 |
| AT3G21850.1 | Thale cress | cytosol | 57.23 | 59.48 |
| CDX93699 | Canola | cytosol | 59.75 | 59.38 |
| AT3G53060.1 | Thale cress | cytosol | 30.82 | 57.65 |
| AT3G21830.1 | Thale cress | cytosol | 53.46 | 55.92 |
| AT3G60020.1 | Thale cress | cytosol | 53.46 | 55.56 |
| CDY44209 | Canola | cytosol | 55.97 | 55.28 |
| CDY45767 | Canola | cytosol | 52.83 | 54.55 |
| CDX77280 | Canola | cytosol | 54.09 | 54.09 |
| CDY16470 | Canola | cytosol | 53.46 | 53.46 |
| CDY29370 | Canola | cytosol | 52.83 | 52.17 |
| CDX80590 | Canola | cytosol | 52.2 | 51.55 |
| CDY03015 | Canola | cytosol | 48.43 | 50.99 |
| CDY63159 | Canola | cytosol | 51.57 | 50.93 |
| CDY67544 | Canola | cytosol | 51.57 | 50.93 |
| CDY01389 | Canola | cytosol | 50.94 | 50.31 |
| CDY17409 | Canola | cytosol | 49.06 | 49.06 |
| CDY04140 | Canola | cytosol | 49.06 | 49.06 |
| CDY14922 | Canola | cytosol | 49.06 | 46.43 |
| CDY43408 | Canola | cytosol | 43.4 | 45.39 |
| CDY68971 | Canola | cytosol | 42.77 | 44.74 |
| CDX96963 | Canola | cytosol | 48.43 | 40.74 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078DJJ5 | EnsemblPlants:CDX89042 | ProteinID:CDX89042 | ProteinID:CDX89042.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00149162001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EEB7BC | SEG:seg |
Description
BnaA04g01440D
Coordinates
chrLK031857:-:711977..712456
Molecular Weight (calculated)
17552.5 Da
IEP (calculated)
3.873
GRAVY (calculated)
-0.236
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKIMLKSS DGESFEVEEE VARQSQTLAN LIEDNCADGE IPIANVTSKI LGMVVEYCKK HVVVVDGGDD SSSSSTSEED LKKWDADFMP IDQSTMFDLI
101: LAANYLNVAS LLDLATQTVA DMIAACKDAA EIRAKFGIEN DFTPEEEEEI VKENQWAFE
101: LAANYLNVAS LLDLATQTVA DMIAACKDAA EIRAKFGIEN DFTPEEEEEI VKENQWAFE
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.