CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX85931
CDX87650
CDX89042
CDX93698
CDX93699
CDX96963
CDY01389
CDY13521
CDY14922
CDY16470
CDY29370
CDY39073
CDY40610
CDY40611
CDY42827
CDY43408
CDY44209
CDY51514
CDY55390
CDY61202
CDY63159
CDY67544
CDY68971
CDY69121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	CDY01389	AT1G20140.1	12795696
AT1G76920.1	CDY29370	AT1G20140.1	12795696
AT1G76920.1	CDY43408	AT1G20140.1	12795696
AT1G76920.1	CDY44209	AT1G20140.1	12795696
AT1G76920.1	CDY63159	AT1G20140.1	12795696
AT1G76920.1	CDY67544	AT1G20140.1	12795696
AT1G76920.1	CDY68971	AT1G20140.1	12795696
AT1G76920.1	CDX68112	AT1G75950.1	12169662
AT1G76920.1	CDX73212	AT1G75950.1	12169662
AT1G76920.1	CDX80590	AT1G75950.1	12169662
AT1G76920.1	CDX85931	AT1G75950.1	12169662
AT1G76920.1	CDX87650	AT1G75950.1	12169662
AT1G76920.1	CDY13521	AT1G75950.1	12169662
AT1G76920.1	CDY39073	AT1G75950.1	12169662
AT1G76920.1	CDX68112	AT1G75950.1	12795696
AT1G76920.1	CDX73212	AT1G75950.1	12795696
AT1G76920.1	CDX80590	AT1G75950.1	12795696
AT1G76920.1	CDX85931	AT1G75950.1	12795696
AT1G76920.1	CDX87650	AT1G75950.1	12795696
AT1G76920.1	CDY13521	AT1G75950.1	12795696
AT1G76920.1	CDY39073	AT1G75950.1	12795696
AT1G76920.1	CDX96963	AT2G03160.1	12795696
AT1G76920.1	CDY14922	AT2G03160.1	12795696
AT1G76920.1	CDX96963	AT2G03170.1	12795696
AT1G76920.1	CDY14922	AT2G03170.1	12795696
AT1G76920.1	CDY42827	AT2G42580.1	19000166
AT1G76920.1	CDY51514	AT2G42580.1	19000166
AT1G76920.1	CDY55390	AT2G42580.1	19000166
AT1G76920.1	CDY61202	AT2G42580.1	19000166
AT1G76920.1	CDX89042	AT3G21850.1	12795696
AT1G76920.1	CDY69121	AT3G21850.1	12795696
AT1G76920.1	CDX77280	AT3G60010.1	12169662
AT1G76920.1	CDX93698	AT3G60010.1	12169662
AT1G76920.1	CDX93699	AT3G60010.1	12169662
AT1G76920.1	CDY16470	AT3G60010.1	12169662
AT1G76920.1	CDY40610	AT3G60010.1	12169662
AT1G76920.1	CDY40611	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	99.18	99.18
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	99.18	99.18
AT1G76920.1	Thale cress	cytosol	87.23	85.83
VIT_18s0076g00350.t01	Wine grape	cytosol	67.93	66.84
PGSC0003DMT400002094	Potato	cytosol	62.5	61.01
Solyc04g071130.1.1	Tomato	extracellular	62.5	61.01
KRH70323	Soybean	cytosol	58.7	58.86
Zm00001d035880_P001	Maize	plastid	25.82	49.48
HORVU7Hr1G083600.1	Barley	extracellular	8.42	49.21
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	25.82	47.74
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	50.82	45.5
Zm00001d026678_P001	Maize	plastid	49.18	44.25
EES13145	Sorghum	cytosol, nucleus, plastid	49.46	44.07
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	48.37	43.52
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	47.28	42.23
TraesCS2D01G588100.1	Wheat	plastid	50.82	42.02
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	51.09	41.69
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.15	41.1
HORVU2Hr1G124540.2	Barley	cytosol	39.13	40.34
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	18.48	38.64
Os04t0686700-01	Rice	plastid	43.75	37.88
HORVU7Hr1G083580.2	Barley	cytosol	9.24	36.96
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	25.54	27.98
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	35.33	25.54
HORVU2Hr1G124610.1	Barley	cytosol	12.5	22.33
Zm00001d024013_P001	Maize	cytosol	12.77	18.01
Zm00001d003753_P001	Maize	cytosol	2.72	11.24
Zm00001d047158_P001	Maize	cytosol	2.72	11.24

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A078IHH1	EnsemblPlants:CDY48548	ProteinID:CDY48548
ProteinID:CDY48548.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00091273001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EB62A3	SEG:seg

Description

BnaC06g18720DBnaC06g18720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHH1]

Coordinates

chrLK032778:+:91002..92432

Molecular Weight (calculated)

41780.6 Da

IEP (calculated)

9.182

GRAVY (calculated)

-0.104

Length

368 amino acids

Sequence
(BLAST)

001: MESSPINRLP TDSLHQIFSS LPLRQIIICR SVCKFFNHLL TSQPFTEIIS ARPPLNLLAL RPPHHHRHRH AANPQPCINV YDPDENRWLR FNLDFLPFRS
101: PQPVASSNGL IYLWGDSVNS VDSSKSLVAC NPLTRQFKVL PQLGSAWSRH GTVLVDSVNR VMVLTELAAL YYSGAVVANQ WLKFSSNLPS KPRSPVLMST
201: SVFALCDVGS PWRSQWKLFS CRLTSLAVTH TNWTCLEKHE WGDIFDIIKR PRLLRGEGES KLLMIGGLKS TFSLNPACST ILILRLCLES LEWEEAGRMP
301: LEMYRGFQES SKFKVFGGGD RVYFSAKRMG KLAMWDCWEG WRWVDGVSGY GDGLCRGFVF EAKLTLMQ

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.