Factsheet for TraesCS2A01G577100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	86.03	94.4
TraesCS2D01G588100.1	Wheat	plastid	91.13	92.36
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	40.35	91.46
Zm00001d035880_P001	Maize	plastid	35.48	83.33
EES13145	Sorghum	cytosol, nucleus, plastid	74.94	81.84
Zm00001d026678_P001	Maize	plastid	74.06	81.66
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	73.84	81.42
HORVU2Hr1G124540.2	Barley	cytosol	62.97	79.55
Os04t0686700-01	Rice	plastid	65.41	69.41
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	51.66	56.55
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	41.91	51.36
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	41.69	51.09
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	41.69	51.09
VIT_18s0076g00350.t01	Wine grape	cytosol	42.35	51.07
AT1G76920.1	Thale cress	cytosol	41.46	50.0
KRH70323	Soybean	cytosol	40.35	49.59
Solyc04g071130.1.1	Tomato	extracellular	40.58	48.54
PGSC0003DMT400002094	Potato	cytosol	40.35	48.28
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	49.45	43.81
Zm00001d024013_P001	Maize	cytosol	12.86	22.22
Zm00001d003753_P001	Maize	cytosol	3.33	16.85
Zm00001d047158_P001	Maize	cytosol	3.33	16.85

Protein Annotations

EnsemblPlants:TraesCS2A01G577100.1	EnsemblPlantsGene:TraesCS2A01G577100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31264	PFAM:PF00646	SEG:seg	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:771328459..771329847

Molecular Weight (calculated)

48099.4 Da

IEP (calculated)

9.361

GRAVY (calculated)

0.041

Length

451 amino acids

Sequence
(BLAST)

001: MTRTPLRPPD FLPDIPLFSP SPHLLLLRLL ASPHPPPATM AGSDDDEAAA APIHCLPPDA LRNVLLRLPL RDAVACRPVS RLFRETLTGP FLALLPALRL
101: LLLRHPRPEG GGCLHAFDPD RRCWLRLPFT SFLPHQAFSP VASSASLLYL WIETGHSPSP SPAPLPSSSS SSSSSSPAAA HPPKALAVCN PLAGTYRLLP
201: PLGSAWARHG TVLAGPGGIV LVLTELAALS YSPSEGSGKW MKHPLSLPSK PRSPILAAGA RAVFALCDVG TPWRSQWKLF SCPLARLTGG WAPVERASWG
301: DVFEILKRPR LLAGAGGRRV LMIGGLRSSF ALDAPCSTVL ILRLDLATME WDEAGRMPPN MYRCFTGLCE AAAQGSAMPA PVAGGNNKVK VFGGDGKVWF
401: GGKRVRGKLA MWEEDDVGSS GGKWDWVDGV PGYGDGVYRG FVFDGGFTAM P

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.