Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002094 | Potato | cytosol | 99.2 | 99.2 |
| VIT_18s0076g00350.t01 | Wine grape | cytosol | 68.97 | 69.52 |
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 61.54 | 63.04 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 61.01 | 62.5 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 61.01 | 62.5 |
| AT1G76920.1 | Thale cress | cytosol | 61.54 | 62.03 |
| KRH70323 | Soybean | cytosol | 55.17 | 56.68 |
| HORVU7Hr1G083600.1 | Barley | extracellular | 8.49 | 50.79 |
| Zm00001d035880_P001 | Maize | plastid | 25.73 | 50.52 |
| TraesCS4A01G184400.1 | Wheat | mitochondrion, plastid | 25.2 | 47.74 |
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 48.54 | 44.53 |
| Zm00001d026678_P001 | Maize | plastid | 48.28 | 44.5 |
| EES13145 | Sorghum | cytosol, nucleus, plastid | 48.54 | 44.31 |
| Zm00001d002882_P001 | Maize | cytosol, nucleus, plastid | 47.48 | 43.77 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 45.36 | 41.5 |
| TraesCS2D01G588100.1 | Wheat | plastid | 48.54 | 41.12 |
| HORVU7Hr1G083560.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 7.96 | 41.1 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 48.54 | 40.58 |
| HORVU2Hr1G124540.2 | Barley | cytosol | 37.14 | 39.22 |
| HORVU7Hr1G066100.1 | Barley | cytosol, mitochondrion, plastid | 18.3 | 39.2 |
| HORVU7Hr1G083580.2 | Barley | cytosol | 9.55 | 39.13 |
| Os04t0686700-01 | Rice | plastid | 42.71 | 37.88 |
| HORVU5Hr1G045010.1 | Barley | extracellular, plastid, vacuole | 23.61 | 26.49 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 34.75 | 25.74 |
| HORVU2Hr1G124610.1 | Barley | cytosol | 12.47 | 22.82 |
| Zm00001d024013_P001 | Maize | cytosol | 10.61 | 15.33 |
| Zm00001d003753_P001 | Maize | cytosol | 2.12 | 8.99 |
| Zm00001d047158_P001 | Maize | cytosol | 2.12 | 8.99 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 |
| InterPro:IPR001810 | InterPro:IPR015915 | UniProt:K4BTA5 | InterPro:Kelch-typ_b-propeller | PFAM:PF00646 | PFscan:PS50181 |
| PANTHER:PTHR45291 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc04g071130.1 | EnsemblPlants:Solyc04g071130.1.1 |
| UniParc:UPI000276682B | SEG:seg | : | : | : | : |
Description
SKP1-interacting partner 15 [Source:Projected from Arabidopsis thaliana (AT1G76920) UniProtKB/Swiss-Prot;Acc:O49279]
Coordinates
chr4:-:58053749..58054882
Molecular Weight (calculated)
42737.6 Da
IEP (calculated)
9.857
GRAVY (calculated)
-0.190
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFSPLNRLP QDTLHQIFSH LTLREIIVSK CVCKCLNATL SSPAFLHLIS TQQPPLSLLA LRPSHRTHTH THNNSSSHCA LHVFDTMLNY WFRFPLSFLP
101: FRSHYPITSS HGLLYLWAEG PTSVSPPGNN SKTLIVCNPL TRQFKLLPQL GSAWCKHGSV LVGSPNQVLV LTELAAIYFS GSTTSNNWLK FSSNLPSKPR
201: SPILISDTIL ALCDVGSPWR SQWKLFRSTV KDLQFSQQWT RLEKHEWGDI FDIMKRPRLL AGKNDKVLMI GGLKSSYSLH STCSTILILR LDMESLEWEE
301: AGRMPPEMFR YFQDSSKFKV FGGGSRVCFS GKRVGRLALW EENERGKGEW RWISGVPGNS DGLYRGFVFE ARLNAVP
101: FRSHYPITSS HGLLYLWAEG PTSVSPPGNN SKTLIVCNPL TRQFKLLPQL GSAWCKHGSV LVGSPNQVLV LTELAAIYFS GSTTSNNWLK FSSNLPSKPR
201: SPILISDTIL ALCDVGSPWR SQWKLFRSTV KDLQFSQQWT RLEKHEWGDI FDIMKRPRLL AGKNDKVLMI GGLKSSYSLH STCSTILILR LDMESLEWEE
301: AGRMPPEMFR YFQDSSKFKV FGGGSRVCFS GKRVGRLALW EENERGKGEW RWISGVPGNS DGLYRGFVFE ARLNAVP
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Arabidopsis Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.