Factsheet for Zm00001d024013_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT1G76920.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT1G76920.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT1G76920.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT1G76920.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT1G76920.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT1G76920.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT1G76920.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047158_P001	Maize	cytosol	16.86	49.44
Zm00001d003753_P001	Maize	cytosol	16.48	48.31
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	50.19	25.74
Zm00001d026678_P001	Maize	plastid	27.59	17.6
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	26.05	16.63
EES13145	Sorghum	cytosol, nucleus, plastid	25.67	16.22
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	24.14	15.33
HORVU2Hr1G124540.2	Barley	cytosol	19.92	14.57
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	18.39	13.04
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	18.39	13.04
TraesCS2D01G588100.1	Wheat	plastid	22.22	13.03
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	22.22	12.86
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	18.01	12.77
AT1G76920.1	Thale cress	cytosol	17.62	12.3
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	17.62	11.16
Zm00001d035880_P001	Maize	plastid	8.05	10.94
VIT_18s0076g00350.t01	Wine grape	cytosol	15.33	10.7
PGSC0003DMT400002094	Potato	cytosol	15.33	10.61
Solyc04g071130.1.1	Tomato	extracellular	15.33	10.61
KRH70323	Soybean	cytosol	14.56	10.35
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	12.26	9.52
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	6.13	9.09
HORVU7Hr1G083580.2	Barley	cytosol	3.07	8.7
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	6.51	8.54
Os04t0686700-01	Rice	plastid	12.26	7.53
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	1.92	6.85
HORVU7Hr1G083600.1	Barley	extracellular	1.53	6.35
HORVU2Hr1G124610.1	Barley	cytosol	3.45	4.37

Protein Annotations

EnsemblPlants:Zm00001d024013_P001	EnsemblPlants:Zm00001d024013_T001	EnsemblPlantsGene:Zm00001d024013	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:CLU_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR025697	PANTHER:PTHR12601
PANTHER:PTHR12601:SF6	PFAM:PF00646	PFAM:PF13236	PFscan:PS51823	ProteinID:AQK40549.1	SEG:seg
SUPFAM:SSF81383	UniParc:UPI0008432C88	UniProt:A0A1D6IXA4	MapMan:35.1	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr10:-:36890850..36892262

Molecular Weight (calculated)

28854.2 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.574

Length

261 amino acids

Sequence
(BLAST)

001: MAAGFGPAPP AEAQPLPPIH HLPPDALHNV LLRLQLRDAV VCRPVSRLFH ETLSPQLLAL AAPHPAPPPP PPPTPRRRRL QAEETRELRT INKWGEMMYE
101: KIKKLDKELA RYVHNNIFFS FAVDSDFEDI SKDHKPYCQN GSSRSTKVSS PDVITKPDAN HGKSAEVVDS KSEEAQLADR EQATYASANN DLKGTKAYQE
201: ADVSGLHNLA MAIVDYRGHR VVAQSIIPGI LQGDKSNSLL YGSVDNGKKI SWNETFNSKV S

Best Arabidopsis Sequence Match ( AT3G52140.1 )
(BLAST)

0001: MAGKSNKSKA KRAAQSTTTN STTDVKSDAP APPVAATVPA TAPVTAAAAP VATAAAPVTA PDNGTLTAVD SAVPEANEVA PTIPKADESE SQVENNDAQP
0101: KQGELRLYPV SVKTQSGGKM ELQLNPGDSV MDIRQFLLDA PETCYFTCYE LLLRNKDGET HHLEDYNEIS EVADITIGGC SLEMVAALYD DRSIRAHVHR
0201: ARDLLSLSTL HSSLSTTLAL QYDAALNKVQ NPGDKPKSDV PELECLGFME DVPGSLKKLI NSTSEEIRSV ENIVFSSFNP PPSHRRLVGD LIYLDVVTLE
0301: GNKYCITGTT KTFYVNSSSG NILDPRPSKS GFEAATLIGL LQKLSSKFKK AFREVMEKKA SAHPFENVQS LLPPHSWLRT YPVPDHKRDA ARAEEALTIS
0401: YGSELIGMQR DWNEELQSCR EFPHTSPQER ILRDRALYKV SSDFVDAALN GAIGVISRCI PPINPTDPEC LHMYVHNNIF FSFAVDADIE QLSKKRPSNQ
0501: MTEKVSSSEK VSCTEGTCDN EEHNNCNEAP LVENEQATYA SANNDLKGTK LYQEADVPGL YNLAMAIIDY RGHRVVAQSV LPGILQGDKS DALLYGSVDN
0601: GKKICWNEDF HAKVLEAAKL LHIKEHSVID ASETVFKLAA PVECKGIVGS DNRHYLLDLM RVTPRDANYT GPESRFCVLR PELITSFCQA ESLEKSKFKT
0701: KADEGGDDSS NVSADTSKVG DALIDGEANG ASNSDQKSIS DKQNTTAEDY AAGSSESSKS CDQIAFNPNV FTDFTLGGNQ EEIAADEENV KKVSSYLVDV
0801: VLPKFIEDLC TLEVSPMDGQ TLTEALHAHG VNVRYIGRVA NGVKHLPHLW DLCLNEITVR SAKHILKDIL RDIEDHDIGS AVSHFLNCFF GNYQTAGGKA
0901: SANSSTAKNQ KKDQPITKKG QGRGKGKASS KKSFSSYMMV DSNILWSDIQ EFAKAKYEFE LPELSRTTAK KVSVLRNLCQ KVGVSIAARK YDFSANTPFE
1001: TSDILDLRPV IKHSVPVCSE AKDLVEMGKV QLAEGMLSES YTFFSEAFSI LQQVTGPMHR EVANCCRYLA MVLYHAGDMA GAIMQQHKEL IINERCLGLD
1101: HPDTAHSYGN MALFYHGLNQ TELALQNMGR ALLLLGLSSG PDHPDVAATF INVAMMYQDM GKMDTALRYL QEALKKNERL LGPEHIQTAV CYHALAIAFN
1201: CMGAFKLSHQ HEKKTYDILV KQLGDDDSRT RDSLNWMKTF KMRELQMTAQ KQKGQAANAA NTQKAIDLLK AHPDLIHAFQ NAAATGRTNA LNSAVLGETQ
1301: PRGRGFDERA ARAAAEVRKK AAAKGLLVRP QGGVPVQAMP PLSQLQNMIN TATVSSEKGG ENGEAKVQEK KESSENGKTE NLAPAGLGAG LTSLDKKKQK
1401: AKK

Arabidopsis Description

Clustered mitochondria protein homolog [Source:UniProtKB/TrEMBL;Acc:F4J5R9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.