CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	EES01073	AT2G42580.1	19000166
AT1G76920.1	EES02247	AT2G42580.1	19000166
AT1G76920.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026678_P001	Maize	plastid	93.7	94.62
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	91.77	92.67
HORVU7Hr1G083600.1	Barley	extracellular	13.8	90.48
Zm00001d035880_P001	Maize	plastid	39.95	85.94
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	41.4	85.93
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.77	83.56
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	81.84	82.24
HORVU7Hr1G083580.2	Barley	cytosol	17.43	78.26
TraesCS2D01G588100.1	Wheat	plastid	81.84	75.96
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	81.84	74.94
Os04t0686700-01	Rice	plastid	71.67	69.65
HORVU2Hr1G124540.2	Barley	cytosol	59.56	68.91
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	28.57	67.05
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	56.17	56.31
VIT_18s0076g00350.t01	Wine grape	cytosol	45.04	49.73
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	44.31	49.73
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	44.07	49.46
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	44.07	49.46
AT1G76920.1	Thale cress	cytosol	44.31	48.93
Solyc04g071130.1.1	Tomato	extracellular	44.31	48.54
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	59.56	48.33
PGSC0003DMT400002094	Potato	cytosol	44.07	48.28
KRH70323	Soybean	cytosol	42.62	47.96
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	38.5	47.32
HORVU2Hr1G124610.1	Barley	cytosol	22.28	44.66
Zm00001d024013_P001	Maize	cytosol	16.22	25.67
Zm00001d003753_P001	Maize	cytosol	3.39	15.73
Zm00001d047158_P001	Maize	cytosol	3.39	15.73

Protein Annotations

MapMan:35.1	EntrezGene:8055460	UniProt:C5YB13	EnsemblPlants:EES13145	ProteinID:EES13145	ProteinID:EES13145.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810
PFAM:PF00646	EnsemblPlantsGene:SORBI_3006G276200	SUPFAM:SSF50965	SUPFAM:SSF81383	unigene:Sbi.2176	UniParc:UPI0001A87640
RefSeq:XP_002448817.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60712561..60714098

Molecular Weight (calculated)

44175.4 Da

IEP (calculated)

9.472

GRAVY (calculated)

0.029

Length

413 amino acids

Sequence
(BLAST)

001: MAAGSGPDTA AEAQPPPPIH HLPPDALHNV LLRLQLRDAV VCRPVSRLFN ETLSPQLLAL LPTLRLLLLR HPRPDGGGCL HAFDPARRTW LRLPFAHFLP
101: YQSFSPVASS TSLLYLWVET SSTTTSPLAL PSTSTSSSSK ASPVHPPKSL AVCNPFAGTY RLLPQLGSAW ARHGTVLAGP GGTVLVLTEL AALSYTPSGS
201: SKWMKHPLSL PSKPRSPILA SAAAAVFALC DVGTPWRSQW KLFSCPLSML TGGWAPVERA AWGDVFEILK RPRLLAGAGG RRVLMIGGLR SSFAMDAPCS
301: TVLILRLDLQ TMEWDEAGRM PPNMYRCFTG LCEAASQGNA VPAAAAGGNN KVKVFGGDGK VWFAGKRVRG KLAMWEEDEM GSGGNWDWVD GVPGYGDGVY
401: RGFVFDGGFT AIP

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.