Factsheet for PGSC0003DMT400002094

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071130.1.1	Tomato	extracellular	99.2	99.2
VIT_18s0076g00350.t01	Wine grape	cytosol	68.7	69.25
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	61.54	63.04
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	61.01	62.5
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	61.01	62.5
AT1G76920.1	Thale cress	cytosol	61.54	62.03
KRH70323	Soybean	cytosol	54.91	56.4
Zm00001d035880_P001	Maize	plastid	25.73	50.52
HORVU7Hr1G083600.1	Barley	extracellular	8.22	49.21
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	24.93	47.24
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	48.28	44.28
Zm00001d026678_P001	Maize	plastid	48.01	44.25
EES13145	Sorghum	cytosol, nucleus, plastid	48.28	44.07
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	47.21	43.52
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	45.36	41.5
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.96	41.1
TraesCS2D01G588100.1	Wheat	plastid	48.28	40.9
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	48.28	40.35
HORVU2Hr1G124540.2	Barley	cytosol	37.14	39.22
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	18.3	39.2
HORVU7Hr1G083580.2	Barley	cytosol	9.28	38.04
Os04t0686700-01	Rice	plastid	42.44	37.65
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	23.34	26.19
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	34.75	25.74
HORVU2Hr1G124610.1	Barley	cytosol	12.2	22.33
Zm00001d024013_P001	Maize	cytosol	10.61	15.33
Zm00001d003753_P001	Maize	cytosol	2.12	8.99
Zm00001d047158_P001	Maize	cytosol	2.12	8.99

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102578850	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M0ZJL3
PFAM:PF00646	EnsemblPlantsGene:PGSC0003DMG400000797	PGSC:PGSC0003DMG400000797	EnsemblPlants:PGSC0003DMT400002094	PFscan:PS50181	PANTHER:PTHR45291
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000296378A	RefSeq:XP_006362821.1	SEG:seg

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000797]

Coordinates

chr4:-:59149519..59151141

Molecular Weight (calculated)

42742.6 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.171

Length

377 amino acids

Sequence
(BLAST)

001: MEFSPLNRLP QDTLHQIFSH LTLREIIVSK CVCKCLNTTL SSPAFLHLIS TQQPPLSLLA LRPSHRTHTH THNNSSSHCA LHVFDTMLNY WFRFPLSFLP
101: FRSHYPITSS HGLLYLWAEG PTSVSPPGNN SKTLIVCNPL TRQFKLLPQL GSAWCKHGSV LVGSPNQVLV LTELAAIYFS GSTTSNNWLK FSSNLPSKPR
201: SPILISDTIL ALCDVGSPWR SQWKLFRSTV KDLQFSQQWT RLEKHEWGDI FDIMKRPRLL AGKNDKVLMI GGLKSSYSLH STCSTILILR LDMESLEWEE
301: AGRMPPEMFR YFQDSSKFKV FGGGSRVCFS GKRVGRLALW EENECGKGEW RWISGVPGNS DGLYRGFVFE ARLNVVP

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.