Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 | |
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071130.1.1 | Tomato | extracellular | 69.52 | 68.97 |
| PGSC0003DMT400002094 | Potato | cytosol | 69.25 | 68.7 |
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 67.11 | 68.21 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 66.84 | 67.93 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 66.84 | 67.93 |
| AT1G76920.1 | Thale cress | cytosol | 66.84 | 66.84 |
| KRH70323 | Soybean | cytosol | 61.5 | 62.67 |
| HORVU7Hr1G083600.1 | Barley | extracellular | 9.36 | 55.56 |
| Zm00001d035880_P001 | Maize | plastid | 24.87 | 48.44 |
| TraesCS4A01G184400.1 | Wheat | mitochondrion, plastid | 25.13 | 47.24 |
| HORVU7Hr1G083560.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 9.09 | 46.58 |
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 50.27 | 45.74 |
| Zm00001d002882_P001 | Maize | cytosol, nucleus, plastid | 49.73 | 45.48 |
| Zm00001d026678_P001 | Maize | plastid | 49.47 | 45.23 |
| EES13145 | Sorghum | cytosol, nucleus, plastid | 49.73 | 45.04 |
| TraesCS2D01G588100.1 | Wheat | plastid | 50.8 | 42.7 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 46.79 | 42.48 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 51.07 | 42.35 |
| HORVU2Hr1G124540.2 | Barley | cytosol | 39.84 | 41.74 |
| Os04t0686700-01 | Rice | plastid | 43.85 | 38.59 |
| HORVU7Hr1G066100.1 | Barley | cytosol, mitochondrion, plastid | 17.65 | 37.5 |
| HORVU7Hr1G083580.2 | Barley | cytosol | 8.82 | 35.87 |
| HORVU5Hr1G045010.1 | Barley | extracellular, plastid, vacuole | 24.33 | 27.08 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 35.03 | 25.74 |
| HORVU2Hr1G124610.1 | Barley | cytosol | 12.03 | 21.84 |
| Zm00001d024013_P001 | Maize | cytosol | 10.7 | 15.33 |
| Zm00001d003753_P001 | Maize | cytosol | 2.41 | 10.11 |
| Zm00001d047158_P001 | Maize | cytosol | 2.41 | 10.11 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100253011 | wikigene:100253011 | Gene3D:2.120.10.80 | MapMan:35.1 | ProteinID:CCB45140 |
| ProteinID:CCB45140.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6GYV4 | EMBL:FN594974 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031146 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | EntrezGene:LOC100253011 | wikigene:LOC100253011 |
| PFAM:PF00646 | PFscan:PS50181 | PANTHER:PTHR44829 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI00015CC75F | ArrayExpress:VIT_18s0076g00350 | EnsemblPlantsGene:VIT_18s0076g00350 | EnsemblPlants:VIT_18s0076g00350.t01 | unigene:Vvi.20583 | RefSeq:XP_002266510 |
| RefSeq:XP_002266510.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:16231850..16233147
Molecular Weight (calculated)
42430.2 Da
IEP (calculated)
9.846
GRAVY (calculated)
-0.107
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASPIYRLP QDTLHYIFST LPLRQIIICR SVCKFFYQTL TAPAFMELIS TQPPLNLIAL RPPHHHHHHH HHHHNRDVSS HNALHVFDPS SNQWVRFPLS
101: FLPFRSPTPV ASSLGLVYLW ADSLNSLESN KSLIVCNPLT RSFQVLPQLG SAWSRHGSVL VGSPNRVLVL TELATLYFSG SDQWLKFSSN LPSKPRSPIL
201: VSDSVLALCD VGSPWRSQWK LFACTLNHLQ KSQPWTRLDR HEWGDVFDIL RRPRLVKGLG NQILMVGGLK SSFSLNAVCS TILILRLDLD SLEWDELGRM
301: PPEMFRCFQE SSKFKVFGAG NRVCFSAKRV GRLALWDYST ETGKGDWRWI NGVPGNGDGL FRGFVFQARL TALP
101: FLPFRSPTPV ASSLGLVYLW ADSLNSLESN KSLIVCNPLT RSFQVLPQLG SAWSRHGSVL VGSPNRVLVL TELATLYFSG SDQWLKFSSN LPSKPRSPIL
201: VSDSVLALCD VGSPWRSQWK LFACTLNHLQ KSQPWTRLDR HEWGDVFDIL RRPRLVKGLG NQILMVGGLK SSFSLNAVCS TILILRLDLD SLEWDELGRM
301: PPEMFRCFQE SSKFKVFGAG NRVCFSAKRV GRLALWDYST ETGKGDWRWI NGVPGNGDGL FRGFVFQARL TALP
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Arabidopsis Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.