Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 86.36 | 87.77 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 86.1 | 87.5 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 85.83 | 87.23 |
| VIT_18s0076g00350.t01 | Wine grape | cytosol | 66.84 | 66.84 |
| PGSC0003DMT400002094 | Potato | cytosol | 62.03 | 61.54 |
| Solyc04g071130.1.1 | Tomato | extracellular | 62.03 | 61.54 |
| KRH70323 | Soybean | cytosol | 57.22 | 58.31 |
| HORVU7Hr1G083600.1 | Barley | extracellular | 8.82 | 52.38 |
| Zm00001d035880_P001 | Maize | plastid | 25.94 | 50.52 |
| TraesCS4A01G184400.1 | Wheat | mitochondrion, plastid | 25.67 | 48.24 |
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 49.47 | 45.01 |
| Zm00001d026678_P001 | Maize | plastid | 48.66 | 44.5 |
| EES13145 | Sorghum | cytosol, nucleus, plastid | 48.93 | 44.31 |
| Zm00001d002882_P001 | Maize | cytosol, nucleus, plastid | 48.13 | 44.01 |
| HORVU7Hr1G083560.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 8.29 | 42.47 |
| TraesCS2D01G588100.1 | Wheat | plastid | 49.73 | 41.8 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 45.99 | 41.75 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 50.0 | 41.46 |
| HORVU2Hr1G124540.2 | Barley | cytosol | 37.43 | 39.22 |
| Os04t0686700-01 | Rice | plastid | 43.85 | 38.59 |
| HORVU7Hr1G066100.1 | Barley | cytosol, mitochondrion, plastid | 17.91 | 38.07 |
| HORVU7Hr1G083580.2 | Barley | cytosol | 9.09 | 36.96 |
| HORVU5Hr1G045010.1 | Barley | extracellular, plastid, vacuole | 24.06 | 26.79 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 34.49 | 25.34 |
| HORVU2Hr1G124610.1 | Barley | cytosol | 12.3 | 22.33 |
| Zm00001d024013_P001 | Maize | cytosol | 12.3 | 17.62 |
| Zm00001d003753_P001 | Maize | cytosol | 2.67 | 11.24 |
| Zm00001d047158_P001 | Maize | cytosol | 2.67 | 11.24 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:844027 | UniProt:A0A178W1H1 | ProteinID:AAC00632.1 |
| ProteinID:AEE35903.1 | ArrayExpress:AT1G76920 | EnsemblPlantsGene:AT1G76920 | RefSeq:AT1G76920 | TAIR:AT1G76920 | RefSeq:AT1G76920-TAIR-G |
| EnsemblPlants:AT1G76920.1 | TAIR:AT1G76920.1 | EMBL:AY065102 | EMBL:AY085473 | Unigene:At.21630 | EMBL:BT008455 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_2 |
| RefSeq:NP_565142.1 | UniProt:O49279 | ProteinID:OAP12340.1 | PFAM:PF00646 | PFAM:PF07646 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50181 | PANTHER:PTHR44829 | SMART:SM00256 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A10F5 |
| SEG:seg | : | : | : | : | : |
Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
Coordinates
chr1:+:28891976..28893721
Molecular Weight (calculated)
42496.5 Da
IEP (calculated)
8.877
GRAVY (calculated)
-0.096
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.