Factsheet for HORVU5Hr1G045010.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G093390.2
HORVU3Hr1G027650.2
HORVU3Hr1G054240.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	HORVU1Hr1G093390.2	AT2G42580.1	19000166
AT1G76920.1	HORVU3Hr1G027650.2	AT2G42580.1	19000166
AT1G76920.1	HORVU3Hr1G054240.2	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G083600.1	Barley	extracellular	16.07	85.71
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.45	84.93
HORVU7Hr1G083580.2	Barley	cytosol	23.21	84.78
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	32.44	61.93
Zm00001d035880_P001	Maize	plastid	29.17	51.04
HORVU2Hr1G124610.1	Barley	cytosol	27.98	45.63
Zm00001d026678_P001	Maize	plastid	47.32	38.88
EES13145	Sorghum	cytosol, nucleus, plastid	47.32	38.5
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	46.13	37.9
Os04t0686700-01	Rice	plastid	43.15	34.12
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	28.27	25.82
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	28.27	25.82
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	27.98	25.54
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	30.95	25.24
VIT_18s0076g00350.t01	Wine grape	cytosol	27.08	24.33
AT1G76920.1	Thale cress	cytosol	26.79	24.06
KRH70323	Soybean	cytosol	26.19	23.98
Solyc04g071130.1.1	Tomato	extracellular	26.49	23.61
PGSC0003DMT400002094	Potato	cytosol	26.19	23.34
HORVU2Hr1G124540.2	Barley	cytosol	24.11	22.69
Zm00001d003753_P001	Maize	cytosol	4.46	16.85
Zm00001d047158_P001	Maize	cytosol	4.46	16.85
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	22.92	15.13
Zm00001d024013_P001	Maize	cytosol	9.52	12.26

Protein Annotations

EnsemblPlants:HORVU5Hr1G045010.1

EnsemblPlantsGene:HORVU5Hr1G045010

SEG:seg

UniParc:UPI000B4730AC

UniProt:A0A287R0F0

MapMan:35.2

Description

No Description!

Coordinates

chrchr5H:+:348103655..348105073

Molecular Weight (calculated)

37189.8 Da

IEP (calculated)

12.171

GRAVY (calculated)

-0.403

Length

336 amino acids

Sequence
(BLAST)

001: MSPRLRSRPP LLAPPPLHLL PPLPGLLPRR LLRLPPLPLD RDRPTPRAPP FLLLLNVVAR SQRSPPAQGT CRLQPAGEHL PPAAPARIRL GAPRHRPRGA
101: RRCRACPHRA RRALLLPVRG IWQVDEAPPL APLQAVEPHP GRRRTRRLCA LRRRHPLAQP VEALPLPARQ AHRRLGARRA RLLGRHIRDP QAPPPAARHG
201: GRRILMIGGL RSSFSLDAPC STVLILRLDL STMEWDEAGR MLPNMYRCFT GLYEAAAQRS AMLPAPVAGG NNKVKVIGGD GKVWFGRKRV RGKLAMWEED
301: DVGSSGDKWD WVDGVSGYGD GVYHGFVFDG GFTAMS

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.