Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76920.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT1G76920.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT1G76920.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 77.87 | 67.64 |
| TraesCS2D01G588100.1 | Wheat | plastid | 79.27 | 63.6 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 79.55 | 62.97 |
| EES13145 | Sorghum | cytosol, nucleus, plastid | 68.91 | 59.56 |
| Zm00001d026678_P001 | Maize | plastid | 67.23 | 58.68 |
| Zm00001d002882_P001 | Maize | cytosol, nucleus, plastid | 66.95 | 58.44 |
| Zm00001d035880_P001 | Maize | plastid | 27.17 | 50.52 |
| HORVU7Hr1G083600.1 | Barley | extracellular | 8.4 | 47.62 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 54.06 | 46.84 |
| Os04t0686700-01 | Rice | plastid | 54.9 | 46.12 |
| TraesCS4A01G184400.1 | Wheat | mitochondrion, plastid | 24.93 | 44.72 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 57.7 | 40.47 |
| VIT_18s0076g00350.t01 | Wine grape | cytosol | 41.74 | 39.84 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 40.34 | 39.13 |
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 40.34 | 39.13 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 40.06 | 38.86 |
| KRH70323 | Soybean | cytosol | 39.5 | 38.42 |
| AT1G76920.1 | Thale cress | cytosol | 39.22 | 37.43 |
| PGSC0003DMT400002094 | Potato | cytosol | 39.22 | 37.14 |
| Solyc04g071130.1.1 | Tomato | extracellular | 39.22 | 37.14 |
| HORVU7Hr1G066100.1 | Barley | cytosol, mitochondrion, plastid | 15.41 | 31.25 |
| HORVU7Hr1G083560.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 6.16 | 30.14 |
| HORVU5Hr1G045010.1 | Barley | extracellular, plastid, vacuole | 22.69 | 24.11 |
| Zm00001d024013_P001 | Maize | cytosol | 14.57 | 19.92 |
| HORVU7Hr1G083580.2 | Barley | cytosol | 1.12 | 4.35 |
| Zm00001d003753_P001 | Maize | cytosol | 0.56 | 2.25 |
| Zm00001d047158_P001 | Maize | cytosol | 0.56 | 2.25 |
| HORVU2Hr1G124610.1 | Barley | cytosol | 1.12 | 1.94 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G124540.2 | EnsemblPlantsGene:HORVU2Hr1G124540 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | ncoils:Coil | PANTHER:PTHR31264 | PFAM:PF00646 | SEG:seg |
| SUPFAM:SSF81383 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:758674366..758675575
Molecular Weight (calculated)
34775.6 Da
IEP (calculated)
10.195
GRAVY (calculated)
0.184
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: APPDMAGSDD DEAAAPIHRL PSDALHNVLL RLQLRDAVAC RPVSRLFREA LTAPFLALLP ALRLLLLRHP RPEGGGCLHA FDPDRRCWLR LPFTSFLPHQ
101: AFSPVASSGS LLYLWIETGP SPAPLPSSSS STSSPAAHPP KALAVCNPLA GTYRLLPPLG SAWARHGTVL AGPGGVVLVL TELAALSYSP SEGSGKWMKH
201: PLSLPSKPRS PILAAGARAV FALCDVGTPW RSQWKLFSCP LARLTGGWAP VERASWGDVF EILKRPRLLP GAGGRRVLMI GGLRSSFALD APCSTVLILR
301: LDLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFFF LVEKQVVVLC PGRHVWF
101: AFSPVASSGS LLYLWIETGP SPAPLPSSSS STSSPAAHPP KALAVCNPLA GTYRLLPPLG SAWARHGTVL AGPGGVVLVL TELAALSYSP SEGSGKWMKH
201: PLSLPSKPRS PILAAGARAV FALCDVGTPW RSQWKLFSCP LARLTGGWAP VERASWGDVF EILKRPRLLP GAGGRRVLMI GGLRSSFALD APCSTVLILR
301: LDLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFFF LVEKQVVVLC PGRHVWF
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Arabidopsis Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.