Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G76920.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT1G76920.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT1G76920.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G083600.1 | Barley | extracellular | 14.12 | 95.24 |
| HORVU7Hr1G083560.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.06 | 87.67 |
| TraesCS4A01G184400.1 | Wheat | mitochondrion, plastid | 40.0 | 85.43 |
| Zm00001d035880_P001 | Maize | plastid | 37.88 | 83.85 |
| HORVU7Hr1G083580.2 | Barley | cytosol | 17.65 | 81.52 |
| EES13145 | Sorghum | cytosol, nucleus, plastid | 69.65 | 71.67 |
| Zm00001d002882_P001 | Maize | cytosol, nucleus, plastid | 68.0 | 70.66 |
| Zm00001d026678_P001 | Maize | plastid | 67.76 | 70.42 |
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 68.0 | 70.32 |
| HORVU7Hr1G066100.1 | Barley | cytosol, mitochondrion, plastid | 28.47 | 68.75 |
| TraesCS2D01G588100.1 | Wheat | plastid | 69.65 | 66.52 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 69.41 | 65.41 |
| HORVU2Hr1G124540.2 | Barley | cytosol | 46.12 | 54.9 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 46.12 | 47.57 |
| HORVU2Hr1G124610.1 | Barley | cytosol | 22.59 | 46.6 |
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 38.12 | 44.02 |
| AT1G76920.1 | Thale cress | cytosol | 38.59 | 43.85 |
| VIT_18s0076g00350.t01 | Wine grape | cytosol | 38.59 | 43.85 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 37.88 | 43.75 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 37.88 | 43.75 |
| HORVU5Hr1G045010.1 | Barley | extracellular, plastid, vacuole | 34.12 | 43.15 |
| Solyc04g071130.1.1 | Tomato | extracellular | 37.88 | 42.71 |
| PGSC0003DMT400002094 | Potato | cytosol | 37.65 | 42.44 |
| KRH70323 | Soybean | cytosol | 36.24 | 41.96 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 42.82 | 35.76 |
| Zm00001d003753_P001 | Maize | cytosol | 3.06 | 14.61 |
| Zm00001d047158_P001 | Maize | cytosol | 3.06 | 14.61 |
| Zm00001d024013_P001 | Maize | cytosol | 7.53 | 12.26 |
Protein Annotations
| EnsemblPlants:Os04t0686700-01 | EnsemblPlantsGene:Os04g0686700 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | ProteinID:BAS91742.1 | SEG:seg | SUPFAM:SSF50965 |
| UniParc:UPI000393B489 | UniProt:A0A0P0WGS0 | MapMan:35.1 | : | : | : |
Description
F-box protein 239Similar to H0701F11.1 protein. (Os04t0686700-01)
Coordinates
chr4:-:35105256..35106781
Molecular Weight (calculated)
44233.5 Da
IEP (calculated)
10.137
GRAVY (calculated)
-0.159
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: SSPPNSLSPW PHPTPTPTPT PPPPPPPRCC RRPSTSCRRT RSTTCSSASP SATPSSAARY RASSTKPSPT TSSPSSPPSA SSSSATRAPK AAAASTPSTP
101: TAALAPLPFS AFLPNQSFSP VASSPSLLYL WLESPSPSPP SLPSSSSSSS TASTAHPPKS LAVCNPFAGT YSFLPPLGSA WARHGTVLAG PGGVVLVLTE
201: LAALSYTPSG SGKWMKHPLS LPSKPRSPIL ASGAAAVFAL CDVGTPWRSQ WKLFSCPLSM LTGGWAPVER SAWGDVFEIL KRPRLLAGAG GRRVLMIGGL
301: RSSFAIDAPC STVLILRLDL ATMEWDEAGR MPPNMYRCFT GLCEAAAQGN AMPTAVAGGN NKVKVFGGDG KVWFAGKRVR GKLAMWEEDE LGNSGGKWDW
401: VDGVPGYSDG VYRGFVFDGG FTAMP
101: TAALAPLPFS AFLPNQSFSP VASSPSLLYL WLESPSPSPP SLPSSSSSSS TASTAHPPKS LAVCNPFAGT YSFLPPLGSA WARHGTVLAG PGGVVLVLTE
201: LAALSYTPSG SGKWMKHPLS LPSKPRSPIL ASGAAAVFAL CDVGTPWRSQ WKLFSCPLSM LTGGWAPVER SAWGDVFEIL KRPRLLAGAG GRRVLMIGGL
301: RSSFAIDAPC STVLILRLDL ATMEWDEAGR MPPNMYRCFT GLCEAAAQGN AMPTAVAGGN NKVKVFGGDG KVWFAGKRVR GKLAMWEEDE LGNSGGKWDW
401: VDGVPGYSDG VYRGFVFDGG FTAMP
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Arabidopsis Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.