Factsheet for Bra003700.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 4
nucleus 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra003735.1-P
Bra004709.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra014519.1-P
Bra015801.1-P
Bra018756.1-P
Bra018757.1-P
Bra025795.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	Bra012213.1-P	AT1G20140.1	12795696
AT1G76920.1	Bra012214.1-P	AT1G20140.1	12795696
AT1G76920.1	Bra012216.1-P	AT1G20140.1	12795696
AT1G76920.1	Bra025795.1-P	AT1G20140.1	12795696
AT1G76920.1	Bra003735.1-P	AT1G75950.1	12169662
AT1G76920.1	Bra008231.1-P	AT1G75950.1	12169662
AT1G76920.1	Bra015801.1-P	AT1G75950.1	12169662
AT1G76920.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G76920.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G76920.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G76920.1	Bra039504.1-P	AT2G03160.1	12795696
AT1G76920.1	Bra039504.1-P	AT2G03170.1	12795696
AT1G76920.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G76920.1	Bra004709.1-P	AT2G42580.1	19000166
AT1G76920.1	Bra014519.1-P	AT3G21850.1	12795696
AT1G76920.1	Bra014159.1-P	AT3G60010.1	12169662
AT1G76920.1	Bra018756.1-P	AT3G60010.1	12169662
AT1G76920.1	Bra018757.1-P	AT3G60010.1	12169662

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	99.46	99.46
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	99.18	99.18
AT1G76920.1	Thale cress	cytosol	87.77	86.36
VIT_18s0076g00350.t01	Wine grape	cytosol	68.21	67.11
PGSC0003DMT400002094	Potato	cytosol	63.04	61.54
Solyc04g071130.1.1	Tomato	extracellular	63.04	61.54
KRH70323	Soybean	cytosol	58.7	58.86
Zm00001d035880_P001	Maize	plastid	25.82	49.48
HORVU7Hr1G083600.1	Barley	extracellular	8.42	49.21
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	25.82	47.74
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	51.09	45.74
Zm00001d026678_P001	Maize	plastid	49.46	44.5
EES13145	Sorghum	cytosol, nucleus, plastid	49.73	44.31
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	48.64	43.77
TraesCS2D01G588100.1	Wheat	plastid	51.09	42.25
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	47.28	42.23
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	51.36	41.91
HORVU7Hr1G083560.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.15	41.1
HORVU2Hr1G124540.2	Barley	cytosol	39.13	40.34
HORVU7Hr1G066100.1	Barley	cytosol, mitochondrion, plastid	18.48	38.64
Os04t0686700-01	Rice	plastid	44.02	38.12
HORVU7Hr1G083580.2	Barley	cytosol	9.24	36.96
HORVU5Hr1G045010.1	Barley	extracellular, plastid, vacuole	25.82	28.27
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	35.6	25.74
HORVU2Hr1G124610.1	Barley	cytosol	12.5	22.33
Zm00001d024013_P001	Maize	cytosol	13.04	18.39
Zm00001d003753_P001	Maize	cytosol	2.72	11.24
Zm00001d047158_P001	Maize	cytosol	2.72	11.24

Protein Annotations

EnsemblPlants:Bra003700.1	EnsemblPlants:Bra003700.1-P	EnsemblPlantsGene:Bra003700	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	PANTHER:PTHR44829	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002541548	UniProt:M4CHL7	MapMan:35.1	:

Description

AT1G76920 (E=1e-182) | F-box family protein (FBX3)

Coordinates

chrA07:-:14574536..14575642

Molecular Weight (calculated)

41787.6 Da

IEP (calculated)

9.030

GRAVY (calculated)

-0.110

Length

368 amino acids

Sequence
(BLAST)

001: MESSPINRLP PDSLHQIFSS LPLRQIIICR SVCKFFNHLL TSQPFTEIIS TRPPLNLLAL RPPHHHRHHH AANPQPCINV YDPDENRWLR FNLDFLPFRS
101: PQPVASSNGL IYLWGDSVNS VDSSKSLVAC NPLTRQFKVL PQLGSAWSRH GTVLVDSVNR VMVLTELAAL YYSGAVVANQ WLKFSSNLPS KPRSPVLMST
201: SVFALCDVGS PWRSQWKLFS CRLTSLAVTH TNWTCLEKHE WGDIFDIIKR PRLLRGEGES KLLMIGGLKS TFSLNPACST ILILRLCLES LEWEEAGRMP
301: LEMYRGFQES SKFKVFGGGD RVYFSAKRMG KLAMWDCWEG WRWVDGVSGY GDGLCRGFVF EAKLTLMQ

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.