Factsheet for TraesCS2D01G588100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76920.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT1G76920.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G610300.1	Wheat	cytosol, peroxisome, plastid	87.87	95.13
TraesCS4A01G184400.1	Wheat	mitochondrion, plastid	40.9	91.46
TraesCS2A01G577100.1	Wheat	cytosol, plasma membrane, plastid	92.36	91.13
Zm00001d035880_P001	Maize	plastid	35.96	83.33
EES13145	Sorghum	cytosol, nucleus, plastid	75.96	81.84
Zm00001d026678_P001	Maize	plastid	75.06	81.66
Zm00001d002882_P001	Maize	cytosol, nucleus, plastid	74.16	80.68
HORVU2Hr1G124540.2	Barley	cytosol	63.6	79.27
Os04t0686700-01	Rice	plastid	66.52	69.65
GSMUA_Achr8P07870_001	Banana	cytosol, peroxisome, plastid	52.36	56.55
Bra003700.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	42.25	51.09
CDY48548	Canola	cytosol, nucleus, peroxisome, plastid	42.02	50.82
CDX68078	Canola	cytosol, nucleus, peroxisome, plastid	42.02	50.82
VIT_18s0076g00350.t01	Wine grape	cytosol	42.7	50.8
AT1G76920.1	Thale cress	cytosol	41.8	49.73
KRH70323	Soybean	cytosol	40.9	49.59
Solyc04g071130.1.1	Tomato	extracellular	41.12	48.54
PGSC0003DMT400002094	Potato	cytosol	40.9	48.28
Zm00001d009851_P001	Maize	nucleus, peroxisome, plasma membrane	49.89	43.61
Zm00001d024013_P001	Maize	cytosol	13.03	22.22
Zm00001d003753_P001	Maize	cytosol	3.37	16.85
Zm00001d047158_P001	Maize	cytosol	3.37	16.85

Protein Annotations

EnsemblPlants:TraesCS2D01G588100.1	EnsemblPlantsGene:TraesCS2D01G588100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31264	PFAM:PF00646	SEG:seg	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:645682057..645683394

Molecular Weight (calculated)

47188.9 Da

IEP (calculated)

9.164

GRAVY (calculated)

0.001

Length

445 amino acids

Sequence
(BLAST)

001: MRNDENAPPP PGFPSRYTTL VPSPSPISSS SSASHPPAAM AGSDDDEAAA APIHCLPPDA LRNVLLRLPL RDAVACRPVS RLFRETLTGP FLALLPALRL
101: LLLRHPRPEG GGCLHAFDPD RRCWLRLPFT AFLPHQAFSP VASSASLLYL WIETSPAPLP SSSSSSSSSS PAAAHPPKAL AVCNPLAGTY RLLPPLGSAW
201: ARHGTVLAGP GGVVLVLTEL AALSYSPSEG SGKWMKHPLS LPSKPRSPIL AAGARAVFAL CDVGTPWRSQ WKLFSCPLAR LTGGWAPVER ASWGDVFEIL
301: KRPRLLAGAG GRRVLMIGGL RSSFALDAPC STVLILRLDL ATMEWDEAGR MPPNMYRCFT GLCEAAAQGS AMPAPVAGGN NKVKVFGGDG KVWFGGKRVR
401: GKLAMWEEDD VGSSGGKWDW VDGVPGYGDG VYRGFVFDGG FTAMP

Best Arabidopsis Sequence Match ( AT1G76920.1 )
(BLAST)

001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP

Arabidopsis Description

SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.