Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G251600.1 | Wheat | cytosol, mitochondrion | 98.84 | 98.84 |
| TraesCS3A01G221800.1 | Wheat | cytosol | 98.55 | 98.55 |
| HORVU3Hr1G054240.2 | Barley | cytosol, mitochondrion | 95.93 | 95.93 |
| EES01073 | Sorghum | cytosol | 81.98 | 82.82 |
| Zm00001d044479_P001 | Maize | cytosol | 81.69 | 82.53 |
| Zm00001d011352_P001 | Maize | cytosol | 79.94 | 80.76 |
| TraesCS1D01G437100.1 | Wheat | nucleus | 75.87 | 74.79 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 56.98 | 60.4 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 59.45 | 59.71 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 22.53 | 58.71 |
| TraesCS3D01G144600.1 | Wheat | cytosol | 55.96 | 57.04 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 41.57 | 56.86 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 56.54 | 54.63 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 54.36 | 53.97 |
| KRH26223 | Soybean | nucleus | 51.45 | 52.37 |
| KRH21985 | Soybean | cytosol | 52.62 | 52.31 |
| KRH55099 | Soybean | nucleus | 51.45 | 52.21 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 53.63 | 51.97 |
| KRH22291 | Soybean | plastid | 43.9 | 51.71 |
| KRH27330 | Soybean | cytosol | 52.33 | 51.58 |
| PGSC0003DMT400032362 | Potato | cytosol | 52.18 | 51.29 |
| Solyc07g062580.2.1 | Tomato | cytosol | 52.18 | 51.21 |
| CDY25865 | Canola | cytosol | 48.69 | 50.91 |
| Bra038116.1-P | Field mustard | cytosol | 48.69 | 50.91 |
| CDY25722 | Canola | cytosol, plastid | 49.13 | 50.67 |
| CDY45930 | Canola | cytosol | 48.26 | 50.38 |
| CDY02514 | Canola | cytosol, plastid | 48.98 | 50.3 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 48.98 | 50.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.48 | 50.0 |
| PGSC0003DMT400054803 | Potato | cytosol | 20.93 | 48.98 |
| Bra000267.1-P | Field mustard | cytosol | 46.95 | 48.07 |
| CDY61202 | Canola | cytosol | 46.8 | 47.99 |
| AT1G53300.1 | Thale cress | cytosol | 48.4 | 47.64 |
| AT3G58620.1 | Thale cress | cytosol | 46.95 | 47.36 |
| CDY55390 | Canola | cytosol | 45.93 | 47.23 |
| AT2G42580.1 | Thale cress | cytosol | 47.24 | 47.03 |
| CDY51514 | Canola | cytosol | 45.64 | 46.94 |
| CDY42827 | Canola | cytosol | 45.64 | 46.8 |
| Bra007405.1-P | Field mustard | cytosol | 45.64 | 46.66 |
| Bra004709.1-P | Field mustard | cytosol | 44.33 | 46.42 |
| CDY34224 | Canola | cytosol | 4.65 | 46.38 |
| CDX71941 | Canola | cytosol | 45.35 | 46.29 |
| CDY49237 | Canola | cytosol | 44.62 | 46.03 |
| PGSC0003DMT400054902 | Potato | cytosol | 19.62 | 45.15 |
| KRH27037 | Soybean | nucleus | 43.75 | 44.59 |
| Bra023795.1-P | Field mustard | cytosol | 5.52 | 43.18 |
| PGSC0003DMT400054904 | Potato | cytosol | 37.21 | 42.38 |
| Solyc10g007240.1.1 | Tomato | cytosol | 36.34 | 42.09 |
| PGSC0003DMT400054911 | Potato | cytosol | 31.83 | 42.03 |
| Solyc10g007230.1.1 | Tomato | cytosol | 36.05 | 41.61 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 36.92 | 41.3 |
| AT3G14950.1 | Thale cress | cytosol | 43.75 | 41.23 |
| Solyc10g007220.1.1 | Tomato | cytosol | 29.51 | 40.2 |
| Solyc10g007420.2.1 | Tomato | cytosol | 24.42 | 39.53 |
| PGSC0003DMT400054909 | Potato | cytosol | 23.4 | 39.08 |
| Bra027292.1-P | Field mustard | cytosol | 41.57 | 38.96 |
| CDX98517 | Canola | cytosol | 40.84 | 38.81 |
| CDX97619 | Canola | cytosol | 40.7 | 38.62 |
| CDY32327 | Canola | cytosol | 40.7 | 38.41 |
| CDY20095 | Canola | nucleus | 40.41 | 38.19 |
| CDY34222 | Canola | cytosol | 17.01 | 37.99 |
| CDY40820 | Canola | mitochondrion | 15.41 | 37.72 |
| Solyc10g007250.1.1 | Tomato | cytosol | 15.26 | 37.63 |
| Bra021583.1-P | Field mustard | nucleus | 41.13 | 37.43 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 20.06 | 36.51 |
| PGSC0003DMT400091014 | Potato | nucleus | 30.81 | 34.93 |
| CDY34223 | Canola | cytosol | 16.42 | 34.66 |
| Bra023793.1-P | Field mustard | cytosol | 20.64 | 34.47 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 15.99 | 33.74 |
| TraesCS5D01G341400.1 | Wheat | cytosol | 8.58 | 25.76 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR013766 | InterPro:IPR019734 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF07719 | PFAM:PF13174 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF395 | SMART:SM00028 | SUPFAM:SSF48452 |
| SUPFAM:SSF52833 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_2 | InterPro:TPR_repeat |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS3D01G231300 | EnsemblPlants:TraesCS3D01G231300.1 | TIGR:cd02947 | SEG:seg |
Description
No Description!
Coordinates
chr3D:-:316167584..316170893
Molecular Weight (calculated)
73479.3 Da
IEP (calculated)
9.171
GRAVY (calculated)
-0.289
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEADRLRLR AAALALDGGA VRDKPDSKAN VFADLGSPVS PLRARASMTT SSSSSSGSAK SPAQSNVGAV GAAGGRSHSG ELAVESHPPR LPGHRRCGSG
101: PLIFSGGSSS GGSGGGGGDR GSTASSPMTN ALPAGNICPS GRVPGAAAAP PPPRSRPDVL GSGTGHYGHG SIMRGAVMGP ARSSIDAPSF LGHSMRSPAS
201: SPVAPPSGGS LQEMTRLGNE WYKKGRHAEA LRYYDRAVSL CPESAACRGN RAAALIGLGR LADALRDSEE AVRLDPASGR AHSRLAGLYL RLGMIEKARR
301: HFTQARHLHE SDPADWEKLQ DVEMHLGRST DARKIGDWKS ALREADAAIA AGADSSQLLR ALRSEALLRL HKLEEADSTL TSLLKLDKSL LSWTAAKLSG
401: MLVESYVHIV RAQVDMALGR FDAAVAAAEN ARLIDPGNAE VGMILNNVRL VARARAQGNE LFKAAKFSDA SIAYGEGLKY DPSNPVLHCN RAACWWKLDR
501: WEKAVDDCNE ALRIQPTYTK ALLRRAMSYS KLERWADCVR DYEVLRKELP ADTEVAEALF HAQVALKTTR GEDVSNMKFG GEVEMVTSVE QLYAATRSPG
601: VSVVYFMSSV NQQCIQITPA VDSLCSECPS MNFLKVNVED SPTVAKAENV RIVPTFKIYK DGARVKEMIC PTLHVLRYSV RHYAVSSS
101: PLIFSGGSSS GGSGGGGGDR GSTASSPMTN ALPAGNICPS GRVPGAAAAP PPPRSRPDVL GSGTGHYGHG SIMRGAVMGP ARSSIDAPSF LGHSMRSPAS
201: SPVAPPSGGS LQEMTRLGNE WYKKGRHAEA LRYYDRAVSL CPESAACRGN RAAALIGLGR LADALRDSEE AVRLDPASGR AHSRLAGLYL RLGMIEKARR
301: HFTQARHLHE SDPADWEKLQ DVEMHLGRST DARKIGDWKS ALREADAAIA AGADSSQLLR ALRSEALLRL HKLEEADSTL TSLLKLDKSL LSWTAAKLSG
401: MLVESYVHIV RAQVDMALGR FDAAVAAAEN ARLIDPGNAE VGMILNNVRL VARARAQGNE LFKAAKFSDA SIAYGEGLKY DPSNPVLHCN RAACWWKLDR
501: WEKAVDDCNE ALRIQPTYTK ALLRRAMSYS KLERWADCVR DYEVLRKELP ADTEVAEALF HAQVALKTTR GEDVSNMKFG GEVEMVTSVE QLYAATRSPG
601: VSVVYFMSSV NQQCIQITPA VDSLCSECPS MNFLKVNVED SPTVAKAENV RIVPTFKIYK DGARVKEMIC PTLHVLRYSV RHYAVSSS
001: MSKLKKPILE SNCVADKLCD SLNMEDNNND KPDTINVDLG SPITPLQTQP SGLSSSTSSF SSSSSGSVTG HAGHTPPVTR KPDSVQPVPS ASKSKSSNLS
101: SAAKSSKSST TPSSAAQFGG SYSPARAQSR ASSQVGAKTG NIIRPSSNSA SVTTKPSGNK SSVSSKQSLK ILPAGNLVPS GKVQITGMTQ EKPRSMVLGP
201: GAKSYGYGSI IRGNNLSPVK PTMMSDSSSV LPLTLSNNST GGPDAYTSWK IAIYGSNPEE VKRFGNEMFR KGCFAEALKL YDRAIELSPS NATYHSNRAA
301: ALSSLGQIGE AVNECEIAIK LDPNFARAHH RLASLLLRLG YVDNAGIHLY SVEEPLDPTV VKMLQQVDKH LNKCTYARRR GEWSIVLTEV SAAIASGADS
401: SPQLAMCKAE ALLKLLRLDD AQRVLECVPK VEPFPASFSH TRFFDMIAEA YTSFVKSQME LALGRFENAV VTAEKASKID PQNNEVEILY KNVRLITRAR
501: DRGNDLYELE RYTEARSAYA EGLKYDPSNA TLLCYRADCF FKVGMWESSI EDCNHALLIL PSYTKPRLQR AALYTKLERW AEAVSDYEIL RKELPYDKEI
601: AESLFHAQVA LKKSRGEVVL NMEFGGEVEE ISSLEELKAA LTRPGVSVVH FFRASDPQCK EISTFVDALC VRYPSLHFLK VEIVKCPEVG NAERVRVVPT
701: FKIYKLGIRM KEIVCPSKEA LEKTVRHYGL
101: SAAKSSKSST TPSSAAQFGG SYSPARAQSR ASSQVGAKTG NIIRPSSNSA SVTTKPSGNK SSVSSKQSLK ILPAGNLVPS GKVQITGMTQ EKPRSMVLGP
201: GAKSYGYGSI IRGNNLSPVK PTMMSDSSSV LPLTLSNNST GGPDAYTSWK IAIYGSNPEE VKRFGNEMFR KGCFAEALKL YDRAIELSPS NATYHSNRAA
301: ALSSLGQIGE AVNECEIAIK LDPNFARAHH RLASLLLRLG YVDNAGIHLY SVEEPLDPTV VKMLQQVDKH LNKCTYARRR GEWSIVLTEV SAAIASGADS
401: SPQLAMCKAE ALLKLLRLDD AQRVLECVPK VEPFPASFSH TRFFDMIAEA YTSFVKSQME LALGRFENAV VTAEKASKID PQNNEVEILY KNVRLITRAR
501: DRGNDLYELE RYTEARSAYA EGLKYDPSNA TLLCYRADCF FKVGMWESSI EDCNHALLIL PSYTKPRLQR AALYTKLERW AEAVSDYEIL RKELPYDKEI
601: AESLFHAQVA LKKSRGEVVL NMEFGGEVEE ISSLEELKAA LTRPGVSVVH FFRASDPQCK EISTFVDALC VRYPSLHFLK VEIVKCPEVG NAERVRVVPT
701: FKIYKLGIRM KEIVCPSKEA LEKTVRHYGL
Arabidopsis Description
TTL2TPR repeat-containing thioredoxin TTL2 [Source:UniProtKB/Swiss-Prot;Acc:F4IXE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.