Factsheet for TraesCS3D01G110700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G11670.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G108900.1	Wheat	golgi	99.84	98.92
TraesCS3B01G128000.1	Wheat	cytosol	90.65	98.48
Os01t0188400-01	Rice	plastid	90.5	90.92
Zm00001d037961_P004	Maize	plastid	85.98	85.71
Zm00001d037962_P003	Maize	plastid	85.51	85.25
KXG21798	Sorghum	plastid	86.45	85.12
HORVU3Hr1G019790.9	Barley	plastid	95.79	84.36
VIT_04s0008g00180.t01	Wine grape	cytosol	73.83	81.03
Zm00001d000316_P001	Maize	plastid	76.01	80.93
TraesCS1D01G123400.2	Wheat	mitochondrion	71.18	79.76
EES00150	Sorghum	plastid	78.97	79.72
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	71.18	77.33
CDX91199	Canola	cytosol	69.78	76.19
Bra023336.1-P	Field mustard	cytosol	69.63	76.02
CDY61446	Canola	cytosol	69.63	76.02
CDX88203	Canola	cytosol	69.31	75.68
Bra009866.1-P	Field mustard	cytosol	69.31	75.68
CDX80544	Canola	cytosol	69.16	75.51
Bra006107.1-P	Field mustard	cytosol	69.0	75.34
CDX70409	Canola	cytosol	68.69	75.0
CDX78432	Canola	cytosol	68.69	75.0
KRH52781	Soybean	mitochondrion	72.27	74.96
AT5G11670.1	Thale cress	cytosol	68.54	74.83
KRH62099	Soybean	mitochondrion	72.27	74.6
AT5G25880.1	Thale cress	cytosol	68.22	74.49
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	47.98	71.3
TraesCS3D01G285700.2	Wheat	plastid	73.21	71.1
OQU86165	Sorghum	mitochondrion	73.52	66.76
TraesCS3D01G275500.1	Wheat	cytosol	69.94	65.07
CDY02046	Canola	mitochondrion	54.67	62.79
PGSC0003DMT400008389	Potato	mitochondrion	21.65	52.45
TraesCS2D01G234500.3	Wheat	mitochondrion	37.85	39.0
TraesCS1D01G164800.4	Wheat	mitochondrion, unclear	37.38	38.9

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF29	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	EnsemblPlantsGene:TraesCS3D01G110700	EnsemblPlants:TraesCS3D01G110700.1	TIGR:cd05312	SEG:seg	:

Description

No Description!

Coordinates

chr3D:+:64370166..64375116

Molecular Weight (calculated)

70290.3 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.150

Length

642 amino acids

Sequence
(BLAST)

001: MLSARTAAAA SPAASLWKRG GGAGARGDGC TSCLEVRRRA AAVTVRAAQP KRVEAVAMES AAETAEAEKE VAAAGGGVED KYGEDRATEE LPVTPWAFSV
101: ASGYTLLRDP HHNKGLAFTE RERDAHYLRG LLPPGVVSQD LQVKKIMHNL RQYKVPLQRY VAMMDLQERN ERLFYKLLID NVEELLPVVY TPTVGEACQK
201: YGSIFRRPQG LYVSLRDKGK VIDVLRNWPE RNIQVIVVTD GERILGLGDL GCQGMGIPVG KLSLYTALGG VRPSACLPIT IDVGTNNEQL LNDEFYIGLR
301: QRRATGEEYH ELMEEFMDAV KQIYGEKVLI QFEDFANHNA FDLLAKYSKS HLVFNDDIQG TASVVLAGLL SSLKVVGGTL AEHTYLFLGA GEAGTGIAEL
401: IALEISKQTN APIEECRKKV FLVDSKGLIV SSRKNSLQPF KTSWAHEREP VTTLLDAIKS IRPTVLIGTS GVGRAFTKEV IEAMASFNER PVIFSLSNPT
501: SHSECTAEEA YKWTQGRAVF ASGSPFDPVE YDGKIRVPGQ ANNAYIFPGF GLGVVISGAI RVHEDMLLAA SETLAAQATQ ENFDKGSIFP PFTNIRKISA
601: LIAASVAAKA YELGLATRLP RPRDLEKYAE SCMYTPVYRS YR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.