CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009866.1-P	Field mustard	cytosol	99.49	99.49
CDX88203	Canola	cytosol	99.49	99.49
AT5G25880.1	Thale cress	cytosol	94.05	94.05
CDX91199	Canola	cytosol	91.84	91.84
CDY61446	Canola	cytosol	91.5	91.5
CDX70409	Canola	cytosol	90.14	90.14
CDX78432	Canola	cytosol	90.14	90.14
Os05t0186300-01	Rice	cytosol, plasma membrane	79.93	82.46
VIT_04s0008g00180.t01	Wine grape	cytosol	80.78	81.2
EES19164	Sorghum	cytosol, peroxisome, plastid	77.72	80.18
Zm00001d037693_P003	Maize	extracellular	77.55	80.0
TraesCS1B01G141700.1	Wheat	cytosol	77.38	79.82
TraesCS1A01G122500.1	Wheat	cytosol	77.21	79.65
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	79.76	79.36
PGSC0003DMT400077452	Potato	cytosol	79.76	79.36
Zm00001d010358_P001	Maize	cytosol	76.53	78.95
CDY02046	Canola	mitochondrion	72.96	76.74
KRH52781	Soybean	mitochondrion	80.78	76.74
KRH62099	Soybean	mitochondrion	80.61	76.21
TraesCS1D01G123400.2	Wheat	mitochondrion	74.15	76.09
TraesCS3B01G128000.1	Wheat	cytosol	75.68	75.3
CDY35901	Canola	cytosol	73.47	74.23
HORVU1Hr1G028030.16	Barley	mitochondrion	75.17	71.99
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.04	70.83
Os01t0188400-01	Rice	plastid	75.17	69.17
TraesCS3D01G110700.1	Wheat	plastid	75.51	69.16
Zm00001d037961_P004	Maize	plastid	75.68	69.1
Zm00001d037962_P003	Maize	plastid	75.51	68.94
CDX68115	Canola	plastid	76.53	68.91
CDX82748	Canola	cytosol	68.2	68.78
CDX85926	Canola	plastid	73.3	68.74
TraesCS3A01G108900.1	Wheat	golgi	75.68	68.67
KXG21798	Sorghum	plastid	76.02	68.56
Zm00001d036873_P001	Maize	cytosol	5.78	68.0
Zm00001d000316_P001	Maize	plastid	69.05	67.33
EES00150	Sorghum	plastid	72.45	66.98
Os02t0665000-01	Rice	cytosol	20.75	65.59
Zm00001d034292_P001	Maize	cytosol	28.4	60.95
HORVU3Hr1G019790.9	Barley	plastid	75.0	60.49
OQU86165	Sorghum	mitochondrion	65.99	54.88
CDY33808	Canola	endoplasmic reticulum, extracellular	3.23	54.29
HORVU5Hr1G018620.1	Barley	cytosol	9.18	46.55
CDY37211	Canola	mitochondrion	40.65	38.67
CDX81448	Canola	mitochondrion	40.65	38.67
CDY68746	Canola	mitochondrion	38.95	37.85
CDX74340	Canola	mitochondrion	38.95	37.66
CDY07209	Canola	mitochondrion	38.78	37.44
CDY51151	Canola	mitochondrion	38.61	37.4
HORVU3Hr1G102340.13	Barley	plastid	10.88	26.67
Zm00001d003090_P001	Maize	mitochondrion	14.63	25.22
Zm00001d051182_P001	Maize	cytosol	6.8	18.1

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:A0A078CX27	EnsemblPlants:CDX80544	ProteinID:CDX80544
ProteinID:CDX80544.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00133653001
InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0004EBA43D	:	:	:	:	:

Description

BnaC07g29000D

Coordinates

chrLK031821:+:1217886..1221797

Molecular Weight (calculated)

64701.0 Da

IEP (calculated)

6.307

GRAVY (calculated)

-0.097

Length

588 amino acids

Sequence
(BLAST)

001: MSSNPSQISD DYVSENRSGV GGGISDVYGE DLATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYLTGLLPP VILSQDVQEK KMMHNLRQYT
101: VPLHRYVALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI FRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNDE FYIGLKQKRA TGEEYAEFLH EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLSDHT FLFLGAGEAG TGIAELIALK ISKETGTPID EIRKKIWLVD SKGLIVSSRK ESLQHFKQPW AHDHEPVKEL
401: LGAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATFNEKPLIL ALSNPTSQAE CTAKEAYTWT EGRAIFASGS PFAPVEYEGK TFFPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA DGLIYPPFTN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.