CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
plastid 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	EES01073	AT2G42580.1	19000166
AT5G11670.1	EES02247	AT2G42580.1	19000166
AT5G11670.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037693_P003	Maize	extracellular	95.26	95.26
Zm00001d010358_P001	Maize	cytosol	94.91	94.91
Os05t0186300-01	Rice	cytosol, plasma membrane	90.0	90.0
TraesCS1B01G141700.1	Wheat	cytosol	86.49	86.49
TraesCS1A01G122500.1	Wheat	cytosol	86.49	86.49
TraesCS1D01G123400.2	Wheat	mitochondrion	82.81	82.37
VIT_04s0008g00180.t01	Wine grape	cytosol	81.05	78.97
CDX91199	Canola	cytosol	80.53	78.06
Bra009866.1-P	Field mustard	cytosol	80.35	77.89
Bra023336.1-P	Field mustard	cytosol	80.35	77.89
CDX88203	Canola	cytosol	80.35	77.89
CDY61446	Canola	cytosol	80.35	77.89
HORVU1Hr1G028030.16	Barley	mitochondrion	83.86	77.85
KXG33287	Sorghum	cytosol	80.88	77.74
CDX80544	Canola	cytosol	80.18	77.72
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	80.35	77.5
OQU83656	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	25.44	77.13
AT5G11670.1	Thale cress	cytosol	79.3	76.87
AT5G25880.1	Thale cress	cytosol	79.12	76.7
CDX78432	Canola	cytosol	78.95	76.53
CDX70409	Canola	cytosol	78.95	76.53
Bra006107.1-P	Field mustard	cytosol	78.95	76.53
KRH52781	Soybean	mitochondrion	82.63	76.09
KRH62099	Soybean	mitochondrion	82.63	75.72
EES01460	Sorghum	cytosol	77.19	74.2
KXG21798	Sorghum	plastid	82.63	72.24
EES00150	Sorghum	plastid	78.95	70.75
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.63	69.44
CDY02046	Canola	mitochondrion	63.68	64.94
OQU86165	Sorghum	mitochondrion	70.53	56.86
KXG38219	Sorghum	mitochondrion	41.75	38.51
KXG36268	Sorghum	mitochondrion	41.75	38.26

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	EntrezGene:8065884	UniProt:C5YU98	ncoils:Coil
EnsemblPlants:EES19164	ProteinID:EES19164	ProteinID:EES19164.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004470	GO:GO:0004471	GO:GO:0004473	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006090	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF37	SMART:SM00919	SMART:SM01274	EnsemblPlantsGene:SORBI_3009G069600
SUPFAM:SSF51735	SUPFAM:SSF53223	unigene:Sbi.5844	UniParc:UPI0001A886BC	RefSeq:XP_002440734.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:8034359..8038174

Molecular Weight (calculated)

62742.2 Da

IEP (calculated)

5.522

GRAVY (calculated)

-0.146

Length

570 amino acids

Sequence
(BLAST)

001: MAGGGVGDAY GEDRATEEQL ITPWAFSVAS GYTLLRDPRH NKGLAFTEAE RDAHYLRGLL PPSLASQELQ EKKLMHNLRQ YTQPLHRYIA MMDLQERNER
101: LFYKLLIDNV EELLPVVYTP TVGEACQKYG SIYRRPQGLY ISLKDKGKIL EVLKNWPERS IQVIVVTDGE RILGLGDLGC QGMGIPVGKL SLYTALGGVR
201: PSACLPITID VGTNNETLLN DEFYIGLRQK RATGEEYHEL LEEFMNAVKQ NYGEKVLTQF EDFANHNAFD LLEKYRESHL VFNDDIQGTA SVVLAGLLAA
301: LKVVGGTLAD HTYLFLGAGE AGTGIAELIA LEMSKHAGSP IEECRSKIWL MDSRGLIVAS RIDSLQAFKK PWAHEHEPVE TLLEAVQSLK PTVLIGTSGK
401: GGTFTQDVVE AMGAQNEKPV IFALSNPTSH SECTAEQAYT WTQGRAVFAS GSPFPTVELD GKTLVPGQSN NAYIFPGFGL GVVISGAIRV RDDMLLAASE
501: ALAEQVTEEH FAKGLIFPPF TNIRAISARI AAKVAAKAYE LGLASRLPRP DDLVKYAESC MYTPTYRCYR

Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.