Factsheet for Zm00001d037693_P003

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G11670.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G11670.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G11670.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19164	Sorghum	cytosol, peroxisome, plastid	95.26	95.26
Zm00001d010358_P001	Maize	cytosol	95.09	95.09
Os05t0186300-01	Rice	cytosol, plasma membrane	90.0	90.0
TraesCS1B01G141700.1	Wheat	cytosol	87.54	87.54
TraesCS1A01G122500.1	Wheat	cytosol	87.19	87.19
TraesCS1D01G123400.2	Wheat	mitochondrion	83.51	83.07
VIT_04s0008g00180.t01	Wine grape	cytosol	82.46	80.34
HORVU1Hr1G028030.16	Barley	mitochondrion	84.39	78.34
CDX91199	Canola	cytosol	80.7	78.23
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	81.05	78.17
Bra023336.1-P	Field mustard	cytosol	80.53	78.06
CDY61446	Canola	cytosol	80.53	78.06
Zm00001d012764_P001	Maize	cytosol	67.89	77.87
CDX88203	Canola	cytosol	80.18	77.72
Bra009866.1-P	Field mustard	cytosol	80.18	77.72
CDX80544	Canola	cytosol	80.0	77.55
AT5G11670.1	Thale cress	cytosol	80.0	77.55
CDX78432	Canola	cytosol	79.65	77.21
CDX70409	Canola	cytosol	79.65	77.21
Bra006107.1-P	Field mustard	cytosol	79.65	77.21
AT5G25880.1	Thale cress	cytosol	79.47	77.04
KRH52781	Soybean	mitochondrion	83.51	76.9
KRH62099	Soybean	mitochondrion	83.68	76.69
Zm00001d037961_P004	Maize	plastid	84.04	74.38
Zm00001d037962_P003	Maize	plastid	83.86	74.22
Zm00001d043601_P003	Maize	mitochondrion	82.28	70.63
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	53.51	70.6
Zm00001d000316_P001	Maize	plastid	74.56	70.48
Zm00001d036873_P001	Maize	cytosol	6.14	70.0
CDY02046	Canola	mitochondrion	63.33	64.58
Zm00001d034292_P001	Maize	cytosol	29.47	61.31
Zm00001d021546_P003	Maize	mitochondrion	42.46	39.1
Zm00001d013911_P001	Maize	mitochondrion	40.0	35.62
Zm00001d042392_P001	Maize	plastid	14.91	32.95
Zm00001d003090_P001	Maize	mitochondrion	16.14	26.98
Zm00001d051182_P001	Maize	cytosol	7.89	20.36

Protein Annotations

EntrezGene:100284598	Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	ProteinID:AQK84574.1	UniProt:B6TVG1
EMBL:EU968976	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072
ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF37	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735
SUPFAM:SSF53223	UniParc:UPI000182E113	EnsemblPlantsGene:Zm00001d037693	EnsemblPlants:Zm00001d037693_P003	EnsemblPlants:Zm00001d037693_T003	SEG:seg

Description

Malic enzyme

Coordinates

chr6:+:134213323..134216929

Molecular Weight (calculated)

62897.6 Da

IEP (calculated)

5.835

GRAVY (calculated)

-0.147

Length

570 amino acids

Sequence
(BLAST)

001: MAGGGVEDVY GEDRATEEQL ITPWAFSVAS GYTLLRDPRH NKGLAFSEAE RDAHYLRGLL PPALASQELQ EKKLMQNLRR YEQPLHRYIA MMDLQERNER
101: LFYKLLIDNV EELLPVVYTP TVGEACQKYG SIYRRPQGLY ISLRDKGKIL EVLKNWPERS IQVIVVTDGE RILGLGDLGC QGMGIPVGKL SLYTALGGVR
201: PSACLPITID VGTNNEALLK DEFYIGLRQR RATGEEYHEL LEEFMTAVKQ NYGEKVLTQF EDFANHNAFD LLEKYRESHL VFNDDIQGTA SVVLAGLLAA
301: LKVVGGTLAD HTYLFLGAGE AGTGIAELIA LEMSKHTGSP IEECRPKIWL MDSKGLIVAS RKDSLQAFKK PWAHEHEPVA TLLEAVQSLK PTVLIGTSGK
401: GGTFTKEVVE AMASQNEKPV IFALSNPTSH SECTAEQAYT WTKGRAVFAS GSPFDSVELD GKVLVPGQSN NAYIFPGFGL GVVISGAIRV RDDMLLAASE
501: ALAEQVTEEH FAKGLIFPPF TNIRAISARI AAKVAAKAYE LGLASRLPRP DDLVKYAESC MYTPIYRSYR

Best Arabidopsis Sequence Match ( AT5G25880.1 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG LASNLPRPKD LVKMAESCMY SPVYRNFR

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.