Factsheet for Zm00001d003090_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G11670.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G11670.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G11670.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036873_P001	Maize	cytosol	14.37	98.0
Zm00001d051182_P001	Maize	cytosol	46.63	71.95
PGSC0003DMT400008389	Potato	mitochondrion	14.66	18.87
Zm00001d012764_P001	Maize	cytosol	26.1	17.91
Zm00001d037693_P003	Maize	extracellular	26.98	16.14
Zm00001d010358_P001	Maize	cytosol	26.98	16.14
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	20.23	15.97
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	27.27	15.74
Zm00001d000316_P001	Maize	plastid	27.27	15.42
Bra006107.1-P	Field mustard	cytosol	26.1	15.14
KRH62099	Soybean	mitochondrion	27.57	15.11
Zm00001d037961_P004	Maize	plastid	28.45	15.06
KRH52781	Soybean	mitochondrion	27.27	15.02
CDX91199	Canola	cytosol	25.81	14.97
CDX78432	Canola	cytosol	25.81	14.97
Zm00001d037962_P003	Maize	plastid	28.15	14.91
VIT_04s0008g00180.t01	Wine grape	cytosol	25.51	14.87
CDX70409	Canola	cytosol	25.51	14.8
Bra023336.1-P	Field mustard	cytosol	25.51	14.8
AT5G11670.1	Thale cress	cytosol	25.51	14.8
CDY61446	Canola	cytosol	25.51	14.8
CDX88203	Canola	cytosol	25.22	14.63
Bra009866.1-P	Field mustard	cytosol	25.22	14.63
CDX80544	Canola	cytosol	25.22	14.63
AT5G25880.1	Thale cress	cytosol	24.93	14.46
Zm00001d043601_P003	Maize	mitochondrion	27.27	14.01
CDY02046	Canola	mitochondrion	22.29	13.6
Zm00001d034292_P001	Maize	cytosol	9.97	12.41
Zm00001d021546_P003	Maize	mitochondrion	15.54	8.56
Zm00001d013911_P001	Maize	mitochondrion	14.37	7.66
Zm00001d042392_P001	Maize	plastid	4.69	6.2

Protein Annotations

Gene3D:3.40.50.10380	MapMan:35.1	UniProt:A0A1D6E6H6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470
GO:GO:0004471	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_N_dom
InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	ProteinID:ONM16057.1	PFAM:PF00390	PRINTS:PR00072	PANTHER:PTHR23406
PANTHER:PTHR23406:SF36	SUPFAM:SSF53223	UniParc:UPI000842DDC7	EnsemblPlantsGene:Zm00001d003090	EnsemblPlants:Zm00001d003090_P001	EnsemblPlants:Zm00001d003090_T001
SEG:seg	:	:	:	:	:

Description

NADP-dependent malic enzyme 4 chloroplastic

Coordinates

chr2:-:31857827..31860685

Molecular Weight (calculated)

38464.2 Da

IEP (calculated)

10.063

GRAVY (calculated)

-0.283

Length

341 amino acids

Sequence
(BLAST)

001: MLRAAIPTEV RPAPRRGLHP LPREFLEKLI RLPDLTASAY DLMSESKGRD GEEGRRWSAR RKQTRSGSGG KDATRREAVG SESGRWRRLR GSGGKRVEAL
101: RRAARCAWWT WLLHASAVAC RVEAEAAAVF FRPPPVGVLP PAPAPAVEGK EKVNGSWIWR ARDRTPSAAR RCPDPFRFAT LRRYSQVTSN LMSYYGMCGL
201: AKECLHQRYF SKEYSEFLDE FMAAVRQNYG QKVLVQFEDF ANHNAFTLLE KYMTNHLVFN DDIHVIKSDA ILAGIIAALK SVGGTLADHT FLFFSVSASM
301: IYWVQLYDQV TSDVICHGEK TSYKMGARAF LVAILAYTDL F

Best Arabidopsis Sequence Match ( AT5G25880.3 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KVTIKSLLIL SQNVNLHIFD ATMKKELCFD YRVVQSLQVE
501: ARLTLFSMMA KNSRLARQTT VTFSLVSVLV

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.