Factsheet for Zm00001d051182_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G11670.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G11670.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G11670.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003090_P001	Maize	mitochondrion	71.95	46.63
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	16.74	8.56
Zm00001d037693_P003	Maize	extracellular	20.36	7.89
Zm00001d010358_P001	Maize	cytosol	19.91	7.72
Zm00001d037961_P004	Maize	plastid	22.17	7.61
Zm00001d037962_P003	Maize	plastid	21.72	7.45
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	19.46	7.28
KRH62099	Soybean	mitochondrion	20.36	7.23
PGSC0003DMT400008389	Potato	mitochondrion	8.6	7.17
Zm00001d000316_P001	Maize	plastid	19.46	7.13
KRH52781	Soybean	mitochondrion	19.91	7.11
VIT_04s0008g00180.t01	Wine grape	cytosol	18.55	7.01
Zm00001d034292_P001	Maize	cytosol	8.6	6.93
AT5G11670.1	Thale cress	cytosol	18.1	6.8
CDX91199	Canola	cytosol	18.1	6.8
CDX88203	Canola	cytosol	18.1	6.8
CDX80544	Canola	cytosol	18.1	6.8
CDX78432	Canola	cytosol	18.1	6.8
Bra009866.1-P	Field mustard	cytosol	18.1	6.8
Bra006107.1-P	Field mustard	cytosol	18.1	6.8
Zm00001d012764_P001	Maize	cytosol	14.93	6.64
AT5G25880.1	Thale cress	cytosol	17.65	6.63
CDY61446	Canola	cytosol	17.65	6.63
CDX70409	Canola	cytosol	17.65	6.63
Bra023336.1-P	Field mustard	cytosol	17.65	6.63
Zm00001d043601_P003	Maize	mitochondrion	19.91	6.63
CDY02046	Canola	mitochondrion	15.38	6.08
Zm00001d021546_P003	Maize	mitochondrion	11.76	4.2
Zm00001d036873_P001	Maize	cytosol	0.9	4.0
Zm00001d013911_P001	Maize	mitochondrion	10.86	3.75
Zm00001d042392_P001	Maize	plastid	4.07	3.49

Protein Annotations

EnsemblPlants:Zm00001d051182_P001	EnsemblPlants:Zm00001d051182_T001	EnsemblPlantsGene:Zm00001d051182	ProteinID:AQK53754.1	SEG:seg	UniParc:UPI0008445065
UniProt:A0A1D6Q5D5	MapMan:35.2	:	:	:	:

Description

NADP-dependent malic enzyme 4 chloroplastic

Coordinates

chr4:+:147593570..147596013

Molecular Weight (calculated)

24356.3 Da

IEP (calculated)

11.682

GRAVY (calculated)

-0.333

Length

221 amino acids

Sequence
(BLAST)

001: MSESKGRDGE EGRRWSVRRK QTRSGSGGKD ATRREAVGSK SGRWRRLRGS GGKRTEALRR AARCAWWTWL LHASVVACRV EVEAAAIFFR PPPVGVLPPA
101: PAPAVEGKEK VNGSWIWRAR DCTPPAARRC PDLLRFATPR GTTAVVLAGI IAALKSAGGT LADHTFWFFS ASYPEPCRTP FILDNAACVD LRVHVFMASG
201: LHRPVLIRAE QRCFHFGPRP S

Best Arabidopsis Sequence Match ( AT5G25880.3 )
(BLAST)

001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KVTIKSLLIL SQNVNLHIFD ATMKKELCFD YRVVQSLQVE
501: ARLTLFSMMA KNSRLARQTT VTFSLVSVLV

Arabidopsis Description

NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.