Factsheet for Zm00001d037962_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G11670.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G11670.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G11670.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G11670.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037961_P004	Maize	plastid	98.91	98.91
KXG21798	Sorghum	plastid	94.25	93.1
TraesCS3B01G128000.1	Wheat	cytosol	80.28	87.48
Os01t0188400-01	Rice	plastid	85.09	85.76
Zm00001d000316_P001	Maize	plastid	80.12	85.57
TraesCS3D01G110700.1	Wheat	plastid	85.25	85.51
TraesCS3A01G108900.1	Wheat	golgi	85.25	84.72
Zm00001d037693_P003	Maize	extracellular	74.22	83.86
Zm00001d010358_P001	Maize	cytosol	72.83	82.28
VIT_04s0008g00180.t01	Wine grape	cytosol	72.83	80.17
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	70.96	77.33
CDX91199	Canola	cytosol	69.88	76.53
CDY61446	Canola	cytosol	69.72	76.36
Bra023336.1-P	Field mustard	cytosol	69.72	76.36
Zm00001d012764_P001	Maize	cytosol	58.7	76.06
CDX88203	Canola	cytosol	69.1	75.68
Bra009866.1-P	Field mustard	cytosol	69.1	75.68
CDX80544	Canola	cytosol	68.94	75.51
KRH52781	Soybean	mitochondrion	72.36	75.28
CDX78432	Canola	cytosol	68.63	75.17
CDX70409	Canola	cytosol	68.63	75.17
Bra006107.1-P	Field mustard	cytosol	68.63	75.17
AT5G11670.1	Thale cress	cytosol	68.63	75.17
AT5G25880.1	Thale cress	cytosol	68.48	75.0
KRH62099	Soybean	mitochondrion	72.2	74.76
HORVU3Hr1G019790.9	Barley	plastid	84.16	74.35
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	48.14	71.76
Zm00001d043601_P003	Maize	mitochondrion	71.43	69.28
Zm00001d036873_P001	Maize	cytosol	5.28	68.0
CDY02046	Canola	mitochondrion	55.28	63.69
Zm00001d034292_P001	Maize	cytosol	24.53	57.66
Zm00001d021546_P003	Maize	mitochondrion	37.73	39.26
Zm00001d013911_P001	Maize	mitochondrion	35.71	35.94
Zm00001d042392_P001	Maize	plastid	13.66	34.11
Zm00001d003090_P001	Maize	mitochondrion	14.91	28.15
Zm00001d051182_P001	Maize	cytosol	7.45	21.72

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	EntrezGene:542331	UniProt:A0A1D6M261	ProteinID:AQK85316.1
ProteinID:AQK85320.1	ProteinID:AQK85328.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470
GO:GO:0004471	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf
InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106
PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF29	SMART:SM00919	SMART:SM01274
SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI000221DB0D	EnsemblPlantsGene:Zm00001d037962	EnsemblPlants:Zm00001d037962_P003	EnsemblPlants:Zm00001d037962_T003
SEG:seg	:	:	:	:	:

Description

malic enzyme5 malic enzyme5

Coordinates

chr6:+:143657542..143663170

Molecular Weight (calculated)

70798.1 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.139

Length

644 amino acids

Sequence
(BLAST)

001: MISARTAAAS PASLWKQGGR SEGGGSCDGC RTYRNTLRRA AAAKVRALPS RAVEAVKMGS AAEMEQEEAE VAAAAAGVVV EDHYGEDSAT EELPILPWAF
101: SVASGYTLLR DPHHNKGLAF MEKERDAHHL RGLLPPAVVP QELQIKKIMH NLRQYQVPLQ RYMAMMDLQE RNERLFYKLL IDNVEELLPV VYTPTVGEAC
201: QKYGSIFRQP QGLYVSLRDK GKVLEVLRNW PHRNIQVICV TDGERILGLG DLGSQGMGIP VGKLALYTAL GGVRPSACLP ITIDVGTNNE KLLNDEFYIG
301: LRQKRATGEE YHELMEEFMA AVKQIYGEKV LIQFEDFANH NAFNLLAKYS KSHLVFNDDI QGTASVVLAG LLAALKVVGR TLAEHTYLFL GAGEAGTGIA
401: ELIALEISKQ TSAPIEECRK KIWLVDSKGL IVDSRKNSVQ SFKKPWAHEH EPLTTLYDAV QSIKPTVLIG TSGVGRTFTK EVVEAMASFN ERPIIFSLSN
501: PTSHSECTAE EAYNWTQGRV IFASGSPFDP VEYDGKVFVP GQSNNAYIFP GFGLGLVISG AIRVHEDMLL AASEALAAQA TQENFDKGSI FPPFTNIRKI
601: SARIAAAVAA KAYELGLATR LPPPRDLVKY AQSCMYTPVY RNYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.