CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11670.1	CDY42827	AT2G42580.1	19000166
AT5G11670.1	CDY51514	AT2G42580.1	19000166
AT5G11670.1	CDY55390	AT2G42580.1	19000166
AT5G11670.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78432	Canola	cytosol	99.66	99.66
Bra006107.1-P	Field mustard	cytosol	99.15	99.15
CDX91199	Canola	cytosol	96.09	96.09
CDY61446	Canola	cytosol	95.75	95.75
AT5G11670.1	Thale cress	cytosol	95.41	95.41
CDX88203	Canola	cytosol	90.48	90.48
CDX80544	Canola	cytosol	90.14	90.14
Os05t0186300-01	Rice	cytosol, plasma membrane	78.4	80.88
VIT_04s0008g00180.t01	Wine grape	cytosol	80.1	80.51
Zm00001d037693_P003	Maize	extracellular	77.21	79.65
EES19164	Sorghum	cytosol, peroxisome, plastid	76.53	78.95
Solyc08g066360.2.1	Tomato	nucleus, plastid, unclear	79.25	78.85
PGSC0003DMT400077452	Potato	cytosol	79.08	78.68
Zm00001d010358_P001	Maize	cytosol	75.68	78.07
TraesCS1A01G122500.1	Wheat	cytosol	75.34	77.72
TraesCS1B01G141700.1	Wheat	cytosol	75.17	77.54
KRH52781	Soybean	mitochondrion	80.1	76.09
KRH62099	Soybean	mitochondrion	80.44	76.05
TraesCS3B01G128000.1	Wheat	cytosol	75.34	74.96
TraesCS1D01G123400.2	Wheat	mitochondrion	72.11	74.0
CDY35901	Canola	cytosol	73.13	73.88
Zm00001d036873_P001	Maize	cytosol	6.12	72.0
CDY02046	Canola	mitochondrion	68.03	71.56
VIT_02s0012g02460.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.21	71.06
HORVU1Hr1G028030.16	Barley	mitochondrion	73.98	70.85
CDX82748	Canola	cytosol	68.71	69.3
Zm00001d037961_P004	Maize	plastid	75.51	68.94
Os01t0188400-01	Rice	plastid	74.83	68.86
TraesCS3D01G110700.1	Wheat	plastid	75.0	68.69
Zm00001d037962_P003	Maize	plastid	75.17	68.63
TraesCS3A01G108900.1	Wheat	golgi	75.34	68.36
KXG21798	Sorghum	plastid	75.34	67.94
CDX68115	Canola	plastid	75.34	67.84
CDX85926	Canola	plastid	72.28	67.78
EES00150	Sorghum	plastid	71.94	66.51
Zm00001d000316_P001	Maize	plastid	67.52	65.84
Os02t0665000-01	Rice	cytosol	20.07	63.44
HORVU3Hr1G019790.9	Barley	plastid	74.49	60.08
Zm00001d034292_P001	Maize	cytosol	27.89	59.85
CDY33808	Canola	endoplasmic reticulum, extracellular	3.23	54.29
OQU86165	Sorghum	mitochondrion	65.14	54.17
HORVU5Hr1G018620.1	Barley	cytosol	9.18	46.55
CDY37211	Canola	mitochondrion	40.82	38.84
CDX81448	Canola	mitochondrion	40.65	38.67
CDY68746	Canola	mitochondrion	39.12	38.02
CDX74340	Canola	mitochondrion	39.29	37.99
CDY07209	Canola	mitochondrion	39.29	37.93
CDY51151	Canola	mitochondrion	39.12	37.89
HORVU3Hr1G102340.13	Barley	plastid	10.88	26.67
Zm00001d003090_P001	Maize	mitochondrion	14.8	25.51
Zm00001d051182_P001	Maize	cytosol	6.63	17.65

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	GO:A0A078C2D5	EnsemblPlants:CDX70409	ProteinID:CDX70409
ProteinID:CDX70409.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00140215001
InterPro:IPR037062	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF39	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0004EDF452	:	:	:	:	:

Description

BnaC03g04930D

Coordinates

chrLK031791:+:305640..309447

Molecular Weight (calculated)

64443.4 Da

IEP (calculated)

5.023

GRAVY (calculated)

-0.094

Length

588 amino acids

Sequence
(BLAST)

001: MGSTPAEVPC EDVADNRSGV GGGISDVYGE DLATLDQLVT PWVTSVASGY SLMRDPRYNK GLAFTDKERD AHYLTGLLPP VVISQEVQER KLMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI FRKPQGLYIS LNEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNQKLLDDE FYIGLKQRRA TGQEYADFLH EFMCAVKQNY GEKVLVQFED FANHNAFDLL SKYMDSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADNT FLFLGAGEAG TGIAELIALK ISKETGAPIE ETRKKIWLVD SKGLIVSSRK ESLQHFKQPW AHEYEPVKDL
401: IGAVNAIKPT VLIGTSGVGQ TFTKEVVEAM ATNNEKPLIL ALSNPTSQAE CTAEQAYTWT EGRAIFGSGS PFDPVEYNGK TYLPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL AAQVTEENFA NGLIYPPFSN IREISANIAA SVAATTYDLG LASNLPRAKD LVKFAESCMY SPVYRNYR

Best Arabidopsis Sequence Match ( AT5G11670.1 )
(BLAST)

001: MGSTPTDLPG EDVADNRSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYLTGLLPP VILSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI FRKPQGLYIS LNEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNDE FYIGLKQRRA TGQEYAEFLH EFMCAVKQNY GEKVLVQFED FANHNAFDLL SKYSDSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKKLADHT FLFLGAGEAG TGIAELIALK ISKETGAPIT ETRKKIWLVD SKGLIVSSRK ESLQHFKQPW AHEHKPVKDL
401: IGAVNAIKPT VLIGTSGVGQ TFTKEVVEAM ATNNEKPLIL ALSNPTSQAE CTAEQAYTWT KGRAIFGSGS PFDPVVYDGK TYLPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL AAQVTEEHYA NGLIYPPFSN IREISANIAA CVAAKTYDLG LASNLPRAKD LVKFAESSMY SPVYRNYR

Arabidopsis Description

NADP-ME2NADP-dependent malic enzyme 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.