Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G11670.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT5G11670.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT5G11670.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G102340.13 | Barley | plastid | 38.79 | 18.75 |
| Zm00001d034292_P001 | Maize | cytosol | 26.72 | 11.31 |
| AT5G25880.1 | Thale cress | cytosol | 46.55 | 9.18 |
| CDY61446 | Canola | cytosol | 46.55 | 9.18 |
| CDX91199 | Canola | cytosol | 46.55 | 9.18 |
| CDX88203 | Canola | cytosol | 46.55 | 9.18 |
| CDX80544 | Canola | cytosol | 46.55 | 9.18 |
| CDX70409 | Canola | cytosol | 46.55 | 9.18 |
| AT5G11670.1 | Thale cress | cytosol | 46.55 | 9.18 |
| Bra006107.1-P | Field mustard | cytosol | 46.55 | 9.18 |
| Bra009866.1-P | Field mustard | cytosol | 46.55 | 9.18 |
| Bra023336.1-P | Field mustard | cytosol | 46.55 | 9.18 |
| CDX78432 | Canola | cytosol | 46.55 | 9.18 |
| VIT_02s0012g02460.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 32.76 | 8.8 |
| VIT_04s0008g00180.t01 | Wine grape | cytosol | 43.97 | 8.72 |
| KRH62099 | Soybean | mitochondrion | 44.83 | 8.36 |
| HORVU3Hr1G070850.1 | Barley | mitochondrion | 44.83 | 8.35 |
| Solyc08g066360.2.1 | Tomato | nucleus, plastid, unclear | 42.24 | 8.29 |
| KRH52781 | Soybean | mitochondrion | 43.97 | 8.24 |
| HORVU1Hr1G028030.16 | Barley | mitochondrion | 43.1 | 8.14 |
| HORVU3Hr1G019790.9 | Barley | plastid | 46.55 | 7.41 |
| CDY02046 | Canola | mitochondrion | 35.34 | 7.33 |
| HORVU3Hr1G068600.2 | Barley | mitochondrion, plastid | 43.97 | 7.21 |
| HORVU2Hr1G050980.2 | Barley | mitochondrion, plastid | 32.76 | 5.78 |
| HORVU1Hr1G045720.1 | Barley | plastid | 30.17 | 4.81 |
| HORVU3Hr1G068570.1 | Barley | cytosol | 1.72 | 4.17 |
| HORVU5Hr1G053200.1 | Barley | endoplasmic reticulum, extracellular | 0.86 | 1.54 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G018620.1 | EnsemblPlantsGene:HORVU5Hr1G018620 | Gene3D:3.40.50.10380 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004471 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0055114 | InterPro:IPR037062 | InterPro:Malic_N_dom | InterPro:Malic_N_dom_sf |
| PANTHER:PTHR23406 | PANTHER:PTHR23406:SF29 | PFAM:PF00390 | SUPFAM:SSF53223 | UniParc:UPI000B4846D2 | UniProt:A0A287QIX5 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:76199223..76199936
Molecular Weight (calculated)
12974.4 Da
IEP (calculated)
8.467
GRAVY (calculated)
-0.284
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: VVAAHSRFCD GDVEEGLRGW GCRPLTKLMI DNVEELLPVV YTPTVGEACE KYGSIFRRSQ GLYVSLQDKG EYSRYRGTDR RRVFRSSLSP TASASYASEI
101: LVARNILATS EITKIH
101: LVARNILATS EITKIH
001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG
Arabidopsis Description
NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.