Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G11670.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT5G11670.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT5G11670.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G018620.1 | Barley | cytosol | 18.75 | 38.79 |
| Os02t0665000-01 | Rice | cytosol | 17.92 | 23.12 |
| Zm00001d034292_P001 | Maize | cytosol | 17.5 | 15.33 |
| VIT_02s0012g02460.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 21.67 | 12.04 |
| HORVU3Hr1G070850.1 | Barley | mitochondrion | 29.58 | 11.4 |
| VIT_04s0008g00180.t01 | Wine grape | cytosol | 27.5 | 11.28 |
| AT5G25880.1 | Thale cress | cytosol | 27.08 | 11.05 |
| CDY61446 | Canola | cytosol | 27.08 | 11.05 |
| CDX91199 | Canola | cytosol | 27.08 | 11.05 |
| Bra023336.1-P | Field mustard | cytosol | 27.08 | 11.05 |
| CDX88203 | Canola | cytosol | 26.67 | 10.88 |
| CDX80544 | Canola | cytosol | 26.67 | 10.88 |
| Bra006107.1-P | Field mustard | cytosol | 26.67 | 10.88 |
| Bra009866.1-P | Field mustard | cytosol | 26.67 | 10.88 |
| CDX70409 | Canola | cytosol | 26.67 | 10.88 |
| CDX78432 | Canola | cytosol | 26.67 | 10.88 |
| Solyc08g066360.2.1 | Tomato | nucleus, plastid, unclear | 26.67 | 10.83 |
| AT5G11670.1 | Thale cress | cytosol | 26.25 | 10.71 |
| KRH62099 | Soybean | mitochondrion | 27.08 | 10.45 |
| KRH52781 | Soybean | mitochondrion | 26.67 | 10.34 |
| HORVU1Hr1G028030.16 | Barley | mitochondrion | 25.42 | 9.93 |
| HORVU3Hr1G019790.9 | Barley | plastid | 25.83 | 8.5 |
| HORVU3Hr1G068600.2 | Barley | mitochondrion, plastid | 25.0 | 8.49 |
| CDY02046 | Canola | mitochondrion | 19.17 | 8.23 |
| HORVU2Hr1G050980.2 | Barley | mitochondrion, plastid | 17.5 | 6.39 |
| HORVU1Hr1G045720.1 | Barley | plastid | 15.0 | 4.95 |
| HORVU3Hr1G068570.1 | Barley | cytosol | 0.83 | 4.17 |
| HORVU5Hr1G053200.1 | Barley | endoplasmic reticulum, extracellular | 0.42 | 1.54 |
Protein Annotations
| Gene3D:3.40.50.10380 | MapMan:35.1 | UniProt:A0A287MI60 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004471 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055114 |
| EnsemblPlantsGene:HORVU3Hr1G102340 | EnsemblPlants:HORVU3Hr1G102340.13 | InterPro:IPR037062 | InterPro:Malic_N_dom | InterPro:Malic_N_dom_sf | PFAM:PF00390 |
| PANTHER:PTHR23406 | PANTHER:PTHR23406:SF52 | SMART:SM01274 | SUPFAM:SSF53223 | TMHMM:TMhelix | UniParc:UPI000B4861DA |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:664824307..664828057
Molecular Weight (calculated)
26536.8 Da
IEP (calculated)
8.822
GRAVY (calculated)
-0.281
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRSRSRGGS RSTPPSSTPP SSTPPSSLLS QKNCSFLVQP EQFPGMECED RATEDQPVMR VGRLHRQRPL PVEGSAAQQG VVVHGDGAER ALPARPAASG
101: RPAPGAPGEV AAAERAAARA PLQRYMFLME LQVASPANPL SQGNVHQTYH ALHMFCFQER NERLFYKLMI DNVEELLPVV STPTVAEACE KYVSIFRRSQ
201: GLYISLKTST FVMIIHFIFH MSSGRFLLQV SETRVWYSCC
101: RPAPGAPGEV AAAERAAARA PLQRYMFLME LQVASPANPL SQGNVHQTYH ALHMFCFQER NERLFYKLMI DNVEELLPVV STPTVAEACE KYVSIFRRSQ
201: GLYISLKTST FVMIIHFIFH MSSGRFLLQV SETRVWYSCC
001: MGTNQTQISD EYVTGNSSGV GGGISDVYGE DSATLDQLVT PWVTSVASGY TLMRDPRYNK GLAFTDKERD AHYITGLLPP VVLSQDVQER KVMHNLRQYT
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG
101: VPLQRYMALM DLQERNERLF YKLLIDNVEE LLPVVYTPTV GEACQKYGSI YRRPQGLYIS LKEKGKILEV LKNWPQRGIQ VIVVTDGERI LGLGDLGCQG
201: MGIPVGKLSL YTALGGIRPS ACLPITIDVG TNNEKLLNNE FYIGLKQKRA NGEEYAEFLQ EFMCAVKQNY GEKVLVQFED FANHHAFELL SKYCSSHLVF
301: NDDIQGTASV VLAGLIAAQK VLGKSLADHT FLFLGAGEAG TGIAELIALK ISKETGKPID ETRKKIWLVD SKGLIVSERK ESLQHFKQPW AHDHKPVKEL
401: LAAVNAIKPT VLIGTSGVGK TFTKEVVEAM ATLNEKPLIL ALSNPTSQAE CTAEEAYTWT KGRAIFASGS PFDPVQYDGK KFTPGQANNC YIFPGLGLGL
501: IMSGAIRVRD DMLLAASEAL ASQVTEENFA NGLIYPPFAN IRKISANIAA SVGAKTYELG
Arabidopsis Description
NADP-ME3Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178UAR6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.