Factsheet for HORVU5Hr1G053200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G086110.1
HORVU3Hr1G070850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79750.1	HORVU3Hr1G070850.1	AT2G19900.1	21798944
AT1G79750.1	HORVU1Hr1G086110.1	AT3G07310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G070850.1	Barley	mitochondrion	86.15	8.99
HORVU3Hr1G068570.1	Barley	cytosol	6.15	8.33
HORVU1Hr1G028030.16	Barley	mitochondrion	78.46	8.31
PGSC0003DMT400068027	Potato	plastid	80.0	8.12
CDX85926	Canola	plastid	76.92	7.97
Bra003738.1-P	Field mustard	plastid	76.92	7.87
VIT_09s0002g03620.t01	Wine grape	cytosol	76.92	7.81
PGSC0003DMT400006726	Potato	plastid	76.92	7.79
AT1G79750.1	Thale cress	plastid	76.92	7.74
CDX68115	Canola	plastid	76.92	7.66
HORVU3Hr1G068600.2	Barley	mitochondrion, plastid	76.92	7.07
HORVU3Hr1G019790.9	Barley	plastid	78.46	7.0
HORVU2Hr1G050980.2	Barley	mitochondrion, plastid	49.23	4.87
HORVU1Hr1G045720.1	Barley	plastid	50.77	4.54
HORVU5Hr1G018620.1	Barley	cytosol	1.54	0.86
HORVU3Hr1G102340.13	Barley	plastid	1.54	0.42
KRH13473	Soybean	plastid	0.0	0.0
Solyc08g066290.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.10380	MapMan:35.1	UniProt:A0A287R8V3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004471
GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	EnsemblPlantsGene:HORVU5Hr1G053200	EnsemblPlants:HORVU5Hr1G053200.1	InterPro:IPR037062
InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	PFAM:PF00390	PANTHER:PTHR23406	PANTHER:PTHR23406:SF35	SUPFAM:SSF53223
SignalP:SignalP-noTM	UniParc:UPI000B4733FB	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:416967625..416968705

Molecular Weight (calculated)

7182.9 Da

IEP (calculated)

4.370

GRAVY (calculated)

0.251

Length

65 amino acids

Sequence
(BLAST)

1: MGIPVGKLAL YTALGGVRLA PCLAITIDVG TNNEELLNDE FYIRLRQKRA TGQECIELLD EFMLA

Best Arabidopsis Sequence Match ( AT2G19900.2 )
(BLAST)

001: MALTELQERN ERLFYKLLID NVEELLPIVY TPTVGEACQK FGSIFRRPQG LFISLKDKGK ILDVLKNWPE RNIQVIVVTD GERILGLGDL GCQGMGIPVG
101: KLALYSALGG VRPSACLPVT IDVGTNNEKL LNDEFYIGLR QKRATGQEYS ELLNEFMSAV KQNYGEKVLI QFEDFANHNA FELLAKYSDT HLVFNDDIQG
201: TASVVLAGLV SAQKLTNSPL AEHTFLFLGA GEAGTGIAEL IALYMSKQMN ASVEESRKKI WLVDSKGLIV NSRKDSLQDF KKPWAHEHEP VKDLLGAIKA
301: IKPTVLIGSS GVGRSFTKEV IEAMSSINER PLIMALSNPT TQSECTAEEA YTWSKGRAIF ASGSPFDPVE YEGKVFVSTQ ANNAYIFPGF GLGLVISGAI
401: RVHDDMLLAA AEALAGQVSK ENYEKGMIYP SFSSIRKISA QIAANVATKA YELGLAGRLP RPKDIVKCAE SSMYSPTYRL YR

Arabidopsis Description

NADP-ME1NADP-dependent malic enzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:O82191]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.