Factsheet for Bra003738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra029638.1-P
Bra039029.1-P
Bra040372.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79750.1	Bra039029.1-P	AT2G19900.1	21798944
AT1G79750.1	Bra029638.1-P	AT3G07310.1	21798944
AT1G79750.1	Bra040372.1-P	AT3G07310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68115	Canola	plastid	98.74	96.02
AT1G79750.1	Thale cress	plastid	86.77	85.29
HORVU5Hr1G053200.1	Barley	endoplasmic reticulum, extracellular	7.87	76.92
KRH09931	Soybean	mitochondrion, plastid	74.8	73.87
Bra009866.1-P	Field mustard	cytosol	68.03	73.47
Bra023336.1-P	Field mustard	cytosol	67.87	73.3
PGSC0003DMT400068027	Potato	plastid	73.54	72.97
KRH23402	Soybean	nucleus	73.86	72.49
Bra006107.1-P	Field mustard	cytosol	67.09	72.45
VIT_09s0002g03620.t01	Wine grape	cytosol	72.76	72.19
Bra039029.1-P	Field mustard	cytosol	66.14	72.16
KRH44278	Soybean	plastid	72.13	71.45
PGSC0003DMT400006726	Potato	plastid	72.13	71.34
Solyc08g066290.2.1	Tomato	cytosol	7.24	63.89
KRH47214	Soybean	mitochondrion	52.91	58.43
Bra037210.1-P	Field mustard	mitochondrion	36.06	37.05
KRH01213	Soybean	cytosol, plastid	16.22	36.27
Bra037347.1-P	Field mustard	mitochondrion	32.13	34.75
Bra000967.1-P	Field mustard	mitochondrion	33.23	34.03

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:5.1.1.4	EnsemblPlantsGene:Bra003738	EnsemblPlants:Bra003738.1	EnsemblPlants:Bra003738.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016043	GO:GO:0016491	GO:GO:0042803	GO:GO:0046872	GO:GO:0050897
GO:GO:0051287	GO:GO:0051289	GO:GO:0055114	InterPro:IPR037062	UniProt:M4CHQ5	InterPro:Malic_NAD-bd
InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase	InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390
PFAM:PF03949	PIRSF:PIRSF000106	PRINTS:PR00072	ScanProsite:PS00331	PANTHER:PTHR23406	PANTHER:PTHR23406:SF36
SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223	UniParc:UPI00025415C2	SEG:seg

Description

AT1G79750 (E=2e-197) ATNADP-ME4 | ATNADP-ME4 (NADP-malic enzyme 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor

Coordinates

chrA07:-:14790776..14793908

Molecular Weight (calculated)

70390.0 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.153

Length

635 amino acids

Sequence
(BLAST)

001: MAFSIDHSLS DLTKLSLLPK PLGHASDMFP FRLSVFPRVH LSHRTSTSRL LSSLGSKVDP NGSVLIETTT PPSPSPDVTG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSQRERDAH YLRGLLPPTV ISQDLQVKKM MHTLRHYQVP LQRYMAMMDL QETNERLFYK LLIEHVEELL PVVYTQLLPV
201: VYTPTVGEAC QKYGSIFLRP QGLFISLKEK GKILEVLRNW PEKNIQGMGI PVGKLSLYTA LGGVRPSACL PVTIDVGTNN EKLLNDEFYI GLRQRRATGE
301: EYSELMHEFM TAVKQNYGEK VVIQFEDFAN HNAFDLLAKY GTTHLVFNDD IQGTASVVLA GLIGALRFVG GSLANHRFLF LGAGEAGTGI AELIALEISK
401: KCQIPLEEAR KNIWLVDSKG LIVSSRKESI QHFKKPWAHD HKPIKELVDA VKAIKPTVLI GTSGVGQTFT QEVVETMAEL NEKPIILSLS NPTSQSECTA
501: EQAYTWSKGR AIFASGSPFA PVEYEGKTFV PGQANNAYIF PGFGLGLIMS GTIRVHDDML LAASEALAEQ LKEEHYEKGM IFPPFRNIRK ISARIAAKVA
601: AKAYELGLAT RLPQPKELEK CAESSMYSPS YHSYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.