CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99623
KRH07269
KRH07429
KRH12915
KRH41507
KRH46625
KRH60218
KRH66142
KRH74263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79750.1	KRH07269	AT2G19900.1	21798944
AT1G79750.1	KRH12915	AT2G19900.1	21798944
AT1G79750.1	KRH41507	AT2G19900.1	21798944
AT1G79750.1	KRH60218	AT2G19900.1	21798944
AT1G79750.1	KRH74263	AT2G19900.1	21798944
AT1G79750.1	KRG99623	AT3G07310.1	21798944
AT1G79750.1	KRH07429	AT3G07310.1	21798944
AT1G79750.1	KRH46625	AT3G07310.1	21798944
AT1G79750.1	KRH66142	AT3G07310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12915	Soybean	cytosol	13.91	72.07
Solyc08g066290.2.1	Tomato	cytosol	8.52	68.06
KRH13473	Soybean	plastid	13.74	64.23
KRH44278	Soybean	plastid	69.22	62.09
KRH09931	Soybean	mitochondrion, plastid	64.17	57.39
KRH23402	Soybean	nucleus	64.17	57.03
KRH74263	Soybean	cytosol	58.61	57.02
KRH07269	Soybean	cytosol	58.61	57.02
KRH52781	Soybean	mitochondrion	60.17	55.9
KRH62099	Soybean	mitochondrion	60.35	55.79
VIT_09s0002g03620.t01	Wine grape	cytosol	60.35	54.22
KRH60218	Soybean	mitochondrion	59.48	54.03
CDX85926	Canola	plastid	58.61	53.75
Bra003738.1-P	Field mustard	plastid	58.43	52.91
PGSC0003DMT400068027	Potato	plastid	58.43	52.5
AT1G79750.1	Thale cress	plastid	58.96	52.48
PGSC0003DMT400006726	Potato	plastid	57.91	51.87
CDX68115	Canola	plastid	58.43	51.45
KRH41507	Soybean	cytosol, peroxisome, plastid	48.52	49.73
KRH01213	Soybean	cytosol, plastid	18.43	37.32
KRH66385	Soybean	mitochondrion	31.13	28.78
KRH65116	Soybean	mitochondrion	30.09	28.64
KRH48207	Soybean	mitochondrion	29.74	28.31
KRH00689	Soybean	mitochondrion	29.22	28.0
KRH40505	Soybean	mitochondrion	29.22	27.95

Protein Annotations

Gene3D:3.40.50.10380	Gene3D:3.40.50.720	MapMan:50.1.1	UniProt:A0A0R0IXY2	EMBL:ACUP02004142	EnsemblPlantsGene:GLYMA_07G015700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004470	GO:GO:0004471	GO:GO:0004473
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006090
GO:GO:0006108	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR037062	EnsemblPlants:KRH47214
ProteinID:KRH47214	ProteinID:KRH47214.1	InterPro:Malic_NAD-bd	InterPro:Malic_N_dom	InterPro:Malic_N_dom_sf	InterPro:Malic_OxRdtase
InterPro:Malic_enzyme_CS	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00390	PFAM:PF03949	PIRSF:PIRSF000106	ScanProsite:PS00331
PANTHER:PTHR23406	PANTHER:PTHR23406:SF36	SMART:SM00919	SMART:SM01274	SUPFAM:SSF51735	SUPFAM:SSF53223
UniParc:UPI0006ED8973	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:1245014..1251198

Molecular Weight (calculated)

64991.4 Da

IEP (calculated)

7.580

GRAVY (calculated)

-0.078

Length

575 amino acids

Sequence
(BLAST)

001: MIVMKINKLD RYRRGSSSRV TCCAPSNTKS HGGAEDQFVT PWSISVAMIF DFVICVCDEW DIFIDASFVQ VKKIIRHIRQ YQVPYTSGGL VNNPFCYSLR
101: ELYNEYRFQL QERNERLFYK LLLDHAEELL PVVYTPTVGE ACQKYGSIFV HPQDLYLSLN EKGRILEVLR NWPEMNIQCL LITIDVGTNN EKLLNDELYF
201: GLRHKRATGQ EYAELLHEFM NAVKQNYGER ILVQFEDFAN HNAFDLLERY RSTHLVFNDD IQGTAQVVLA GLVAALKLVG GDLTDHRFLF LGAGEAGTGI
301: AELIALETSK RTNVPLDEVR KNIWLVDSKI GLIVSSRKES LQHFKKPWAH EHEPVKELVN VVKQIKPTVL IGTSGQGRTF TKDVVEAMAS INEVIRQSTI
401: SYLLCILMST EANLSIICNA CRNLLFFLFP TRHHSRNALL KRLKLGASGS PFAPVEYDGK VFVPGINAYI FPGFGLGLIM SGTIRVHDDL LLAASEALAS
501: QVTQEDYDKG LIYPPFSNIR KKISAHIAAN VAAKAYELGE PEFSFNSLAT RLPQPKDLVK FAESSVYSPV YRGYR

Best Arabidopsis Sequence Match ( AT1G79750.1 )
(BLAST)

001: MISLTPSLFL NKTVVPGCST RLSLRQPRTI ITPPASLRVF SSLGSNQDPT GSVLIETTAT SSSSLETSAA DIVPKSTVSG GVQDVYGEDA ATEDMPITPW
101: SLSVASGYTL LRDPHHNKGL AFSHRERDAH YLRGLLPPTV ISQDLQVKKI MHTLRQYQVP LQKYMAMMDL QETNERLFYK LLIDHVEELL PVIYTPTVGE
201: ACQKYGSIFL RPQGLFISLK EKGKIHEVLR NWPEKNIQVI VVTDGERILG LGDLGCQGMG IPVGKLSLYT ALGGVRPSAC LPVTIDVGTN NEKLLNDEFY
301: IGLRQRRATG EEYSELMHEF MTAVKQNYGE KVVIQFEDFA NHNAFDLLAK YGTTHLVFND DIQGTASVVL AGLIAALRFV GGSLSDHRFL FLGAGEAGTG
401: IAELIALEIS KKSHIPLEEA RKNIWLVDSK GLIVSSRKES IQHFKKPWAH DHEPIRELVD AVKAIKPTVL IGTSGVGQTF TQDVVETMAK LNEKPIILSL
501: SNPTSQSECT AEEAYTWSQG RAIFASGSPF APVEYEGKTF VPGQANNAYI FPGFGLGLIM SGTIRVHDDM LLAASEALAE ELMEEHYEKG MIYPPFRNIR
601: KISARIAAKV AAKAYELGLA TRLPQPKELE QCAESSMYSP SYRSYR

Arabidopsis Description

NADP-ME4Malic enzyme [Source:UniProtKB/TrEMBL;Acc:A0A178W4H6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.