CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	KRH16959	AT5G24660.1	21798944
AT3G07310.1	KRH53667	AT5G24660.1	21798944
AT3G07310.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46625	Soybean	plastid	90.05	88.39
KRH07429	Soybean	plastid	64.78	62.11
KRH66142	Soybean	plastid	64.52	61.07
VIT_00s2037g00010.t01	Wine grape	cytosol	16.13	56.07
VIT_00s0360g00020.t01	Wine grape	mitochondrion	36.56	55.51
Bra037475.1-P	Field mustard	plastid	45.16	49.41
CDX86293	Canola	plastid	45.16	49.41
AT5G48590.1	Thale cress	plastid	45.16	48.84
CDX85350	Canola	plastid	44.62	48.82
AT3G07310.1	Thale cress	plastid	48.12	48.64
CDY28064	Canola	plastid	46.77	47.15
Bra029638.1-P	Field mustard	plastid	45.97	46.47
PGSC0003DMT400022517	Potato	mitochondrion	30.91	46.18
CDY34905	Canola	plastid	42.2	45.91
Bra040372.1-P	Field mustard	plastid	42.74	45.3
CDY24630	Canola	plastid	45.43	45.07
CDY60823	Canola	plastid	41.94	44.32
PGSC0003DMT400053202	Potato	cytosol	31.99	41.18
PGSC0003DMT400022519	Potato	plastid	42.47	40.51
PGSC0003DMT400084936	Potato	cytosol	31.99	39.8
Solyc06g007550.1.1	Tomato	cytosol	29.57	39.15
Solyc09g057580.2.1	Tomato	plastid	21.77	38.03
Os11t0456100-01	Rice	mitochondrion	37.37	36.01
TraesCS1A01G390400.1	Wheat	mitochondrion	37.37	35.55
TraesCS1B01G418600.1	Wheat	mitochondrion	37.37	35.55
TraesCS1D01G398600.1	Wheat	mitochondrion	37.1	35.29
Zm00001d049232_P002	Maize	mitochondrion	36.29	34.62
Solyc06g007560.1.1	Tomato	plastid	33.33	34.25
HORVU1Hr1G086110.1	Barley	plastid	38.44	34.21
KRH39607	Soybean	golgi	28.76	26.23
KRH60570	Soybean	plastid	27.96	26.0
KRH48705	Soybean	plastid	28.49	25.98
KRH74317	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.23	25.86
KRH41876	Soybean	plastid	27.96	25.74
KRH39016	Soybean	plastid	28.23	25.36

Protein Annotations

EMBL:ACUP02011225	EnsemblPlants:KRG99623	EnsemblPlantsGene:GLYMA_18G158300	EntrezGene:100794032	InterPro:At3g17800-like	InterPro:DUF760
PANTHER:PTHR31808	PANTHER:PTHR31808:SF2	PFAM:PF05542	ProteinID:KRG99622.1	ProteinID:KRG99623	ProteinID:KRG99623.1
UniParc:UPI00023DA014	UniProt:I1N1Z1	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:35310247..35316303

Molecular Weight (calculated)

42584.0 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.263

Length

372 amino acids

Sequence
(BLAST)

001: MENCVFHHHL RSMITLPQPP STPLFPKVMR VRASAGRRHC EFSSQNAPLE PRSLVGKFLS GVLQNRRQLF HVVAKEELKM LSDDRDSALA RMHLSQHSDE
101: ALLHRRIAQV KENESMIAIA DVMYLLILYK FSEIRVNLVP KLSSCLYDGR LEILPSKDWD LESIHSLEVL DIIRKHVSTV TGLRSNPSVR ESWETTPIRQ
201: VWLARVYVAS ILYGYFLKSV SLRYNLERSL SLSDHDFHHG HKIGPSFHDM YHSGAKDVMF GNKSDIQSVW HGLIGQEEEI EDLKCYVTGF HPGSFERCAK
301: LRSKEAVHLV ESHSNALFGD GKSGLSQHDD IIVTSFSSLR RLVLEAVAFG SFLWETEDYI DSVYKLKDQE VE

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.