Factsheet for PGSC0003DMT400022517

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07310.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT3G07310.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT3G07310.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT3G07310.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022519	Potato	plastid	100.0	63.85
VIT_00s0360g00020.t01	Wine grape	mitochondrion	59.04	60.0
VIT_00s2037g00010.t01	Wine grape	cytosol	25.3	58.88
PGSC0003DMT400053202	Potato	cytosol	51.81	44.64
PGSC0003DMT400084936	Potato	cytosol	45.38	37.79
AT3G07310.1	Thale cress	plastid	50.6	34.24
Bra037475.1-P	Field mustard	plastid	46.59	34.12
CDX86293	Canola	plastid	46.59	34.12
CDX85350	Canola	plastid	46.18	33.82
KRH07429	Soybean	plastid	51.81	33.25
Bra029638.1-P	Field mustard	plastid	49.0	33.15
AT5G48590.1	Thale cress	plastid	45.78	33.14
CDY28064	Canola	plastid	49.0	33.06
CDY24630	Canola	plastid	49.4	32.8
CDY34905	Canola	plastid	44.98	32.75
Bra040372.1-P	Field mustard	plastid	45.78	32.48
KRH66142	Soybean	plastid	50.6	32.06
CDY60823	Canola	plastid	44.98	31.82
KRH46625	Soybean	plastid	47.39	31.13
KRG99623	Soybean	plastid	46.18	30.91
Solyc09g057580.2.1	Tomato	plastid	25.3	29.58
TraesCS1B01G418600.1	Wheat	mitochondrion	41.77	26.6
TraesCS1A01G390400.1	Wheat	mitochondrion	41.37	26.34
TraesCS1D01G398600.1	Wheat	mitochondrion	41.37	26.34
Os11t0456100-01	Rice	mitochondrion	40.56	26.17
Zm00001d049232_P002	Maize	mitochondrion	40.56	25.9
HORVU1Hr1G086110.1	Barley	plastid	42.97	25.6
PGSC0003DMT400083980	Potato	plastid	35.34	20.9
PGSC0003DMT400024037	Potato	plastid	33.33	20.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400022517	EnsemblPlantsGene:PGSC0003DMG401008726	InterPro:At3g17800-like	InterPro:DUF760	PANTHER:PTHR31808	PANTHER:PTHR31808:SF2
PFAM:PF05542	PGSC:PGSC0003DMG401008726	UniParc:UPI000294A000	UniProt:M1AGU7	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401008726]

Coordinates

chr9:-:31783140..31785149

Molecular Weight (calculated)

28736.1 Da

IEP (calculated)

8.647

GRAVY (calculated)

-0.135

Length

249 amino acids

Sequence
(BLAST)

001: MYMLISYKFS GIRVHLIPRL SKCMYNGRLE IWPCKDWELE SIHSCEVLEM VREHLTTVLG WKEKSNVADN WTPTEVQKFK LCQVYAASVL YGYFLKSASL
101: RHHLEKKLDH INPYLDIASY NQLLLSEIRS LGSEIVPFGC IGGTRSTSVG QIPLLREKKQ DKLKYYVMSF DPETLQMWAK PKSKEALNLI EKHSYALFGD
201: KKTGLVASDE VILTSLASLK RIVLEAIAFG SFLWDAEEYV RIVYKLKEN

Best Arabidopsis Sequence Match ( AT3G07310.1 )
(BLAST)

001: MDSCLSNQTA LQFLPSRSRR QSGDGGGGFV IPAKRKIQYS SMVVVAAAGQ SRCEPGSSLN APLEPRSAQG RFLRSVLLNK RQLFHYAAAD ELKQLADDRE
101: AALARMSLSS GSDEASLHRR IAELKERYCK TAVQDIMYML IFYKYSEIRV PLVPKLSRCI YNGRLEIWPS KDWELESIYS CDTLEIIKEH VSAVIGLRVN
201: SCVTDNWATT QIQKLHLRKV YAASILYGYF LKSASLRHQL ECSLSDIHGS GYLKSPIFGC SFTTGTAQIS NKQQLRHYIS DFDPETLQRC AKPRTEEARN
301: LIEKQSLALF GTEESDETIV TSFSSLKRLV LEAVAFGTFL WDTELYVDGA YKLKENGNAE EQEGKKSI

Arabidopsis Description

F21O3.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9S7A6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.